PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

EcC054884.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ERF

Protein Properties

Length: 166aa MW: 18475.2 Da PI: 6.9598

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054884.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.9	1.5e-19	31	83	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+G+r+++ +g+++AeIrdps ng +r +lg+f t eeAa+a+++a+ +++g+ EcC054884.20 31 PQYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETVEEAARAYDRAAYAFRGH 83 68******.******98887..***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.7E-14	31	83	IPR001471	AP2/ERF domain
CDD	cd00018	1.79E-18	31	91	No hit	No description
PROSITE profile	PS51032	24.474	32	90	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.33E-23	32	91	IPR016177	DNA-binding domain
SMART	SM00380	1.6E-33	32	96	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.2E-31	32	91	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.1E-11	33	44	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.1E-11	56	72	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MEGSSSRGNQ NNENNKETGK KRALQSRCDP PQYRGIRRRP WGKFAAEIRD PSRNGARLWL 60 GTFETVEEAA RAYDRAAYAF RGHLAILNFP NEQQYYAQND HNVSGHPSSF STPQSLSSLS 120 FSSAGSSSSA VSAPAEPSRD VIELEYLDDK LLEELLQSHS DINPGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-27	32	92	14	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010039181.1	2e-81	PREDICTED: ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	2e-41	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A059D2K5	4e-54	A0A059D2K5_EUCGR; Uncharacterized protein
STRING	XP_010039181.1	7e-81	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	8e-29	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]