PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054880.150
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 266aa    MW: 29711.9 Da    PI: 9.4548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054880.150genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-1270116354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+ErrRR+riNs +++Lr l+P       +K++Ka+ L ++v  +k+L
  EcC054880.150  70 KSHSEAERRRRERINSHLNTLRGLVPCT-----EKMDKATLLAEVVSQVKEL 116
                    68*************************8.....7**********99988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.67567116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1370120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1371119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1073122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.56E-4155223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0015074Biological ProcessDNA integration
GO:0015743Biological Processmalate transport
GO:0030001Biological Processmetal ion transport
GO:0005615Cellular Componentextracellular space
GO:0003676Molecular Functionnucleic acid binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0008270Molecular Functionzinc ion binding
GO:0019904Molecular Functionprotein domain specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MALYAPNSSF PIGSDFFNVF DTFQRDFGGI NGVPRGGSLV LDSDKSELVK APVGVIKKGV  60
TQEKLMAAMK SHSEAERRRR ERINSHLNTL RGLVPCTEKM DKATLLAEVV SQVKELKKKA  120
IEANKGLLVP MDADEITVKP CGDGARDDEF SFRATICCEY RPELLSEMRR ALEVLPLKIV  180
KTEISTLEGR VKNAFVFSSS AEERKNFDSE ARQSLMSSVR QALNSLRDKS PDLPEYSPRT  240
TITSKRRRLT SFDSSSSSSR ETRSYC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580ERRRRE
2244248KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057079.10.0PREDICTED: transcription factor bHLH106
TrEMBLA0A059C6W60.0A0A059C6W6_EUCGR; Uncharacterized protein
STRINGXP_010057079.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-32bHLH family protein