PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054864.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 326aa    MW: 35330.7 Da    PI: 10.0861
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054864.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.24e-1874119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W+++Ed  l ++v+q+G+++W++I+  ++ gR++k+c++rw + 
     EcC054864.80  74 KGSWSPQEDATLMKLVEQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 119
                      799*****************************.***********985 PP
2Myb_DNA-binding53.26.6e-17128170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed  +v+a+k +G++ W+tIar ++ gRt++ +k++w++ 
     EcC054864.80 128 PFTPLEDATIVEAHKVHGNK-WATIARLLP-GRTDNAIKNHWNST 170
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.5269124IPR017930Myb domain
SuperFamilySSF466893.18E-3071167IPR009057Homeodomain-like
SMARTSM007178.0E-1573122IPR001005SANT/Myb domain
PfamPF002497.5E-1874119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2475127IPR009057Homeodomain-like
CDDcd001673.94E-1476118No hitNo description
PROSITE profilePS5129420.556125175IPR017930Myb domain
SMARTSM007174.6E-14125173IPR001005SANT/Myb domain
CDDcd001671.94E-11128171No hitNo description
Gene3DG3DSA:1.10.10.602.2E-22128174IPR009057Homeodomain-like
PfamPF002496.8E-14128170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000413Biological Processprotein peptidyl-prolyl isomerization
GO:0006457Biological Processprotein folding
GO:0006468Biological Processprotein phosphorylation
GO:0006886Biological Processintracellular protein transport
GO:0006897Biological Processendocytosis
GO:0005774Cellular Componentvacuolar membrane
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0019867Cellular Componentouter membrane
GO:0003677Molecular FunctionDNA binding
GO:0003755Molecular Functionpeptidyl-prolyl cis-trans isomerase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
GO:0046983Molecular Functionprotein dimerization activity
GO:0070569Molecular Functionuridylyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
NNLFLKSFPH TASLSLLATH ITPTTIPYKR KTPVSSHHRH SPPRTSSRVS LGGGSGGGGG  60
DMRVTSVDGV DRVKGSWSPQ EDATLMKLVE QHGPRNWSLI STGIPGRSGK SCRLRWCNQL  120
SPTVQHRPFT PLEDATIVEA HKVHGNKWAT IARLLPGRTD NAIKNHWNST LRRKRPGEQS  180
SMSSESNSEK HPGRDNTAAE SETDLEIKRQ CLRVLPDENS RDGEVRPKGP RTSLTLSPPG  240
GSVVAALEDD KAAPNQADGD QDPASTRSGN AKVAAATAAM DDSCLVMIMK RMIAEEVRKY  300
IDTMCMQQGV APGVRKPESS STVKDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-37711744107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031187.10.0PREDICTED: myb-related protein A
TrEMBLA0A059A9S41e-150A0A059A9S4_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010031187.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-53myb domain protein 70