PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054823.150
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 223aa    MW: 24574.7 Da    PI: 9.0188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054823.150genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-1063111355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  EcC054823.150  63 NSHSLAERVRREKISERMRMLQELVPGC----NKITGKAVMLDEIINYVQSLQ 111
                    58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.30E-1058115No hitNo description
PROSITE profilePS5088815.56760110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.84E-1760128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1761124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-763111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-1066116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0006506Biological ProcessGPI anchor biosynthetic process
GO:0006508Biological Processproteolysis
GO:0006816Biological Processcalcium ion transport
GO:0007018Biological Processmicrotubule-based movement
GO:0015074Biological ProcessDNA integration
GO:0055114Biological Processoxidation-reduction process
GO:0071805Biological Processpotassium ion transmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0004185Molecular Functionserine-type carboxypeptidase activity
GO:0004190Molecular Functionaspartic-type endopeptidase activity
GO:0004506Molecular Functionsqualene monooxygenase activity
GO:0004584Molecular Functiondolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005388Molecular Functioncalcium-transporting ATPase activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
GO:0015079Molecular Functionpotassium ion transmembrane transporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046983Molecular Functionprotein dimerization activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
NNEGDDSDVL RLQNEKKQKI EQPESADFSK HNTKQSKDDS SNDGEAPKEN YIHMRARRGQ  60
ATNSHSLAER VRREKISERM RMLQELVPGC NKITGKAVML DEIINYVQSL QQQVEFLSMK  120
LSTLIPGMSI DLEKALSKEA HSRGGGATNL ALNPGMGLXP ISPTTMPKDL PLVPNSIESK  180
PNSSATEPRT LAAMLKYPAL VLGLVFTKAS LDVHRAHETG AKN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061618.11e-110PREDICTED: transcription factor bHLH74
RefseqXP_010061619.11e-110PREDICTED: transcription factor bHLH74
SwissprotQ6NKN92e-58BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A059BSH81e-109A0A059BSH8_EUCGR; Uncharacterized protein
STRINGXP_010061617.11e-110(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.17e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]