PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054815.220
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 366aa    MW: 41335.6 Da    PI: 6.449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054815.220genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047228250123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ C+k+F+++  L  H   H
  EcC054815.220 228 HQCEVCKKVFRSSQALGGHRVIH 250
                    79***********9998887666 PP
2zf-C2H212.90.00034288310123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+Cp Cg++F +   L  H r+H
  EcC054815.220 288 YECPFCGRVFGNGQALGGHKRSH 310
                    99**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.6426IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-4528IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001226251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.08E-10226250No hitNo description
PfamPF139122.9E-7227252IPR007087Zinc finger, C2H2
SMARTSM003550.047228250IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286228250IPR007087Zinc finger, C2H2
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
SuperFamilySSF576675.08E-10283310No hitNo description
Gene3DG3DSA:3.30.160.603.9E-4284310IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.4E-10287311IPR007087Zinc finger, C2H2
SMARTSM003550.011288310IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845288310IPR007087Zinc finger, C2H2
PROSITE patternPS000280290310IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006421Biological Processasparaginyl-tRNA aminoacylation
GO:0006479Biological Processprotein methylation
GO:0006508Biological Processproteolysis
GO:0006754Biological ProcessATP biosynthetic process
GO:0006810Biological Processtransport
GO:0008202Biological Processsteroid metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005840Cellular Componentribosome
GO:0016021Cellular Componentintegral component of membrane
GO:0031012Cellular Componentextracellular matrix
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003865Molecular Function3-oxo-5-alpha-steroid 4-dehydrogenase activity
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0004816Molecular Functionasparagine-tRNA ligase activity
GO:0005215Molecular Functiontransporter activity
GO:0005524Molecular FunctionATP binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016887Molecular FunctionATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MERPRCKLCF RTFANGRALG GHMKAHLASL KIHRTHVAES ITSYPSSSSP EEEEEEEEEQ  60
QQQEEQQEEE EQESSRGDQE IEEKSLIYGL RENPRRSVKC ADPEFSFSGG SGFAVVQDRE  120
SETESRNPTR RRSKRTRRKL GGCDDNAEDE KQRKQKLKPS QPSSPAEPEP VSSVSDTSPE  180
EDVAMCLMLL SRDKWRRKRR DGDDHDREEV EEGQKGNLMG NEAERKHHQC EVCKKVFRSS  240
QALGGHRVIH RKSVGLMGCD KKRQEDERER RDGWSKEMVM ARKKERVYEC PFCGRVFGNG  300
QALGGHKRSH MMGLGGSSVG GNGDGAQSSR SKVSANLLDL NLPAPAEEDN FSVVSDDGEF  360
TQPIKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053481.10.0PREDICTED: zinc finger protein ZAT4
TrEMBLA0A059CHX30.0A0A059CHX3_EUCGR; Uncharacterized protein
STRINGXP_010053481.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-21C2H2-like zinc finger protein