PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054815.120
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 194aa    MW: 22280.1 Da    PI: 8.4619
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054815.120genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.87e-201562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l ++++ +G ++WktIa++ g++R++k+c++rw++yl
    EcC054815.120 15 KGAWTAEEDSKLSQYIEIHGAKRWKTIAAKSGLNRCGKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding537.9e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
    EcC054815.120  68 RGNISDEEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4511062IPR017930Myb domain
SMARTSM007176.6E-161464IPR001005SANT/Myb domain
SuperFamilySSF466899.17E-3014109IPR009057Homeodomain-like
PfamPF002492.3E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-251669IPR009057Homeodomain-like
CDDcd001671.97E-111762No hitNo description
PROSITE profilePS5129426.50863117IPR017930Myb domain
SMARTSM007174.3E-1667115IPR001005SANT/Myb domain
PfamPF002494.1E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2570118IPR009057Homeodomain-like
CDDcd001679.55E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006421Biological Processasparaginyl-tRNA aminoacylation
GO:0006479Biological Processprotein methylation
GO:0006508Biological Processproteolysis
GO:0006754Biological ProcessATP biosynthetic process
GO:0006810Biological Processtransport
GO:0008202Biological Processsteroid metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005840Cellular Componentribosome
GO:0016021Cellular Componentintegral component of membrane
GO:0031012Cellular Componentextracellular matrix
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003865Molecular Function3-oxo-5-alpha-steroid 4-dehydrogenase activity
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0004816Molecular Functionasparagine-tRNA ligase activity
GO:0005215Molecular Functiontransporter activity
GO:0005524Molecular FunctionATP binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016887Molecular FunctionATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAPKNDESAK KVMSKGAWTA EEDSKLSQYI EIHGAKRWKT IAAKSGLNRC GKSCRLRWLN  60
YLRPNIKRGN ISDEEEDLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKINQK  120
DKRQEVSTAQ ETTSQLKTRV AAPMEEEGAN IVGSSEPTFD VNEFFDFSTE GSYGLEWVNK  180
FLELDEDQCL TEKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30131185109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053502.11e-136PREDICTED: transcription factor MYB114
SwissprotQ962763e-53MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A059CIQ31e-135A0A059CIQ3_EUCGR; Uncharacterized protein
STRINGXP_010053502.11e-136(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.11e-55myb domain protein 23
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]