PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054796.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 26743.9 Da PI: 4.8474 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 211 | 233 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C k+F+r n+++H tH EcC054796.40 211 FSCPVCFKTFNRYNNMQTHTHTH 233 89*****************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.44E-5 | 184 | 234 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 211 | 236 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 211 | 234 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 213 | 235 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006164 | Biological Process | purine nucleotide biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004019 | Molecular Function | adenylosuccinate synthase activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0005525 | Molecular Function | GTP binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016746 | Molecular Function | transferase activity, transferring acyl groups |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MTDPFFKFNP LHHHHHHYFS PPSNPQPPYY YSSSAYHNFT FVDHHHEQTP PPHPPIREAL 60 PLLSLLSPTR QQEQEQDQEQ EQEHEQGQGQ GQNQEENFLM EVDRPKQSAG AQDEDDDGDQ 120 DDDDDDETGV TVALHIGLPS PTAAELASVM MLASSSSSCS SSEIITAHDH HNKPDQEHGV 180 GEDCGYLMSR INKGQYWIPT PSQILIGPTQ FSCPVCFKTF NRYNNMQTHT HTHTHS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057579.1 | 1e-107 | PREDICTED: zinc finger protein WIP2 | ||||
TrEMBL | A0A059DIY2 | 1e-66 | A0A059DIY2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010057579.1 | 1e-106 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-30 | C2H2 family protein |