PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054761.90
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 368aa    MW: 41688 Da    PI: 5.0483
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054761.90genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.9e-34421482102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT......XTTSEEEEESXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks......kekiweFkhksFkkgkke 92 
                   Fl+k+y+i++d+ +++++sw++ g sfvv+d+++fa+++Lp+yFkh+nf+SFvRQLn+Y  ++++ +e+ ++       +++ weF+++ F +g+k+
  EcC054761.90  42 FLTKTYDIVDDPGTDHVVSWNAGGGSFVVWDPHSFATHLLPRYFKHNNFSSFVRQLNTYMIHEIELTEEPKSWqgfrktDPDRWEFANEGFLRGQKH 138
                   9***************************************************************99997755456654449**************** PP

                   XXXXXXXXXX CS
  HSF_DNA-bind  93 llekikrkks 102
                   ll++ikr+k 
  EcC054761.90 139 LLKSIKRRKA 148
                   *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-5338146IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.3E-3738146IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-3438146IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-3042146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-164265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-168092IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-1693105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000413Biological Processprotein peptidyl-prolyl isomerization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006457Biological Processprotein folding
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003755Molecular Functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNPLYPVKQE FPGASSSSAA EAPAMNPPEP MEGLHDVGPP PFLTKTYDIV DDPGTDHVVS  60
WNAGGGSFVV WDPHSFATHL LPRYFKHNNF SSFVRQLNTY MIHEIELTEE PKSWQGFRKT  120
DPDRWEFANE GFLRGQKHLL KSIKRRKAPS GLIPQQQAVG PCVEVGYFGP DGEVDRLKRD  180
KQVLMLELVK LRQQQQNTRA YLQAMEQRLQ KTEVKQKQMM AFLARAMQNP AFLQQLLQQK  240
EKRKELEEAV TKKRRRPIDQ GPSSSQAVEP RQGLEGTSSV KAEPLEFRDF GVEVSELEAL  300
ALEMQGLGRA RQEVEEGLDD IEPPPDGVDK DLDEGFWEEL FSEGGEDEDV DLLSNRLGYL  360
GSSPKKRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-244014618120Heat shock factor protein 1
5d5u_B5e-244014627129Heat shock factor protein 1
5d5v_B5e-244014627129Heat shock factor protein 1
5d5v_D5e-244014627129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145LKSIKRR
2241255KRKELEEAVTKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721425.10.0PREDICTED: heat stress transcription factor A-2b
SwissprotQ6VBB21e-124HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A059A8640.0A0A059A864_EUCGR; Uncharacterized protein
STRINGXP_010038059.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-105heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]