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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054759.130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27725 Da PI: 5.7064 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121.7 | 6.5e-38 | 5 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p GfrF Pt+eel+++yL++++ g + ++ ++vi+ +di+++ePw+Lp+ +++++++w+fF++ ++++a+g r++r++++gyWkatg+ v EcC054759.130 5 PTGFRFYPTEEELISFYLHNQLGGLNQDElHRVIPVLDIFNTEPWNLPQlageLCREDREQWFFFAPLQEREARGGRPSRSMATGYWKATGSPGYV 100 89*********************9995551667***************656654445677************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++++g+kk+++fy g+ ++g+kt+W ++ yr+ EcC054759.130 101 YSSDNKVIGVKKSMIFYMGKPSTGRKTHWKLNLYRA 136 *******************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-40 | 3 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.588 | 4 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-17 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEKYPTGFRF YPTEEELISF YLHNQLGGLN QDELHRVIPV LDIFNTEPWN LPQLAGELCR 60 EDREQWFFFA PLQEREARGG RPSRSMATGY WKATGSPGYV YSSDNKVIGV KKSMIFYMGK 120 PSTGRKTHWK LNLYRAIELS PTNLDSTSSN ISIPKLRREF ALCRVYVVSG RSRAFDRRRL 180 EAVARETTIQ GSDNTASSEG GHEGDGCADA SSSEAVVANA GSSHQWEMAS LEDPIWDWEQ 240 LDWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-29 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swm_B | 4e-29 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swm_C | 4e-29 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swm_D | 4e-29 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_A | 4e-29 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_B | 4e-29 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_C | 4e-29 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_D | 4e-29 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010030466.1 | 1e-169 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-86 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059AML1 | 1e-167 | A0A059AML1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010030466.1 | 1e-168 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-89 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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