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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054745.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 262aa MW: 30105.4 Da PI: 10.165 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.2 | 1.6e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri++++ rqvtfskRr+g++KKA ELS+LCdaev +i+fs tgkly+++s EcC054745.10 9 KRIDDSTSRQVTFSKRRKGLIKKARELSILCDAEVGLIVFSCTGKLYDFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 70 | 7.6e-24 | 82 | 155 | 10 | 83 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 +++ +++q+e+a L+++++ Lq+ +R+l Ge+L+ L +k+Lq+Le+qLe slk i +kK +++ +qi+el k EcC054745.10 82 PASEIKHCQREVASLRQQLQHLQERHRQLTGEQLSGLRVKDLQNLENQLEMSLKGIHAKKVQIFSDQIKELNLK 155 567899****************************************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.02 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.48E-43 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-31 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-21 | 85 | 155 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.072 | 86 | 207 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRGKIVIKR IDDSTSRQVT FSKRRKGLIK KARELSILCD AEVGLIVFSC TGKLYDFASS 60 SMQSVLERYK EFRGEGHELH NPASEIKHCQ REVASLRQQL QHLQERHRQL TGEQLSGLRV 120 KDLQNLENQL EMSLKGIHAK KVQIFSDQIK ELNLKVFTKL TPSFQWYGHR LSSDSHKLNS 180 FQGNMLHEEN KELHRKTSLL LQENNALRTK VYKARDVNHA KLYFHEPATT TIVHDLFAPS 240 NLQLSQPQPQ SKEAPLEATN LG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-22 | 1 | 78 | 1 | 77 | MEF2C |
5f28_B | 2e-22 | 1 | 78 | 1 | 77 | MEF2C |
5f28_C | 2e-22 | 1 | 78 | 1 | 77 | MEF2C |
5f28_D | 2e-22 | 1 | 78 | 1 | 77 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010068314.2 | 1e-166 | PREDICTED: MADS-box transcription factor 23-like | ||||
Swissprot | Q9SZJ6 | 2e-74 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | B9RX62 | 3e-96 | B9RX62_RICCO; Mads box protein, putative | ||||
STRING | XP_010068314.1 | 1e-166 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM530 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-65 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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