PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054699.200
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 305aa    MW: 33824.8 Da    PI: 5.0111
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054699.200genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.8e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l d++k  G g W+  +++ g++R++k+c++rw++yl
    EcC054699.200 14 RGAWTAMEDKILTDYIKANGEGKWRNLPKKAGLRRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding513.3e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++
    EcC054699.200  67 RGNITLDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      7899******************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.645961IPR017930Myb domain
SuperFamilySSF466892.93E-2712108IPR009057Homeodomain-like
SMARTSM007178.1E-121363IPR001005SANT/Myb domain
PfamPF002496.4E-131461IPR001005SANT/Myb domain
CDDcd001675.53E-91661No hitNo description
PROSITE profilePS5129424.43462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-2465116IPR009057Homeodomain-like
SMARTSM007176.6E-1566114IPR001005SANT/Myb domain
PfamPF002493.3E-1467110IPR001005SANT/Myb domain
CDDcd001672.29E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000045Biological Processautophagosome assembly
GO:0000290Biological Processdeadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0006090Biological Processpyruvate metabolic process
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0015979Biological Processphotosynthesis
GO:0016567Biological Processprotein ubiquitination
GO:0031347Biological Processregulation of defense response
GO:0045087Biological Processinnate immune response
GO:0055114Biological Processoxidation-reduction process
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0005669Cellular Componenttranscription factor TFIID complex
GO:0009654Cellular Componentphotosystem II oxygen evolving complex
GO:0045254Cellular Componentpyruvate dehydrogenase complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0004742Molecular Functiondihydrolipoyllysine-residue acetyltransferase activity
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0016810Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRSPCCAKE GVNRGAWTAM EDKILTDYIK ANGEGKWRNL PKKAGLRRCG KSCRLRWLNY  60
LRPDIKRGNI TLDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TIGRKLQSSS  120
SNSGFVSSRP SLSSFQGSPK SALEKLTIDD TLMPVEPRVS HAKAPACPKA LLSPASCQDR  180
EAQAPDMVDD KDQSSDRHED QVTTVRASDG NSNVSCNFMA DFELDANFLE AFLESELATD  240
TQQSCFVNSG LDDSHKRELP SLKSSRDSQE TLAFIDPGET ILSESDLQCM ASLLEDEIDG  300
FNTTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062698.10.0PREDICTED: myb-related protein Zm38
TrEMBLA0A059BU760.0A0A059BU76_EUCGR; Uncharacterized protein
STRINGXP_010062698.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-63myb domain protein 3