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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054671.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21140.6 Da PI: 10.0517 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.9 | 9.5e-17 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i n+ r +t+ kR++g++KKA+E +LC+++ ++ii+++ g EcC054671.20 11 IPNEKARRITYEKRKKGMMKKAQEFTTLCGVDTCMIIYGPAGS 53 78999***********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.7E-19 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.829 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-20 | 2 | 99 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.19E-20 | 2 | 89 | No hit | No description |
PRINTS | PR00404 | 1.2E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-17 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009850 | Biological Process | auxin metabolic process | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0010210 | Molecular Function | IAA-Phe conjugate hydrolase activity | ||||
GO:0010211 | Molecular Function | IAA-Leu conjugate hydrolase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MGRRKLVLEL IPNEKARRIT YEKRKKGMMK KAQEFTTLCG VDTCMIIYGP AGSAATTEPE 60 IWPASPEKVK CIIERYMSKG VDRRAKRMVG LPEFFADRNK KVNAELAKVR LANGEAKYPI 120 SEALIDGLSE EDMRRLLGSL GNKLEAAKAR LAVMKEDAMR RSSSLMNDHN LPANDHTYNH 180 HHHMPCS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037296.1 | 1e-132 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
Refseq | XP_018720655.1 | 1e-132 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A059A6L7 | 1e-130 | A0A059A6L7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037296.1 | 1e-131 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 2e-26 | AGAMOUS-like 82 |