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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054618.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 179aa MW: 20043.5 Da PI: 10.3115 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++ F++ L H +H EcC054618.40 43 FKCKTCNRQFPSFQALGGHRASH 65 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00026 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H EcC054618.40 92 HECSICGLKFSLGQALGGHMRRH 114 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.19E-5 | 39 | 71 | No hit | No description |
Pfam | PF13912 | 2.6E-12 | 43 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.083 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.93 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.09E-6 | 88 | 115 | No hit | No description |
Pfam | PF13912 | 9.4E-9 | 92 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.162 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MMKRSRDDYE RMNLDMAKCL MLLTHGVNAN PKTAAVHHHE DNFKCKTCNR QFPSFQALGG 60 HRASHKKPKL LETKPEDSTK SVLGTTANPK MHECSICGLK FSLGQALGGH MRRHRVQLMS 120 GSVMKMDEIF AVGPTIPVLK RSKSSNKRVM GLDLNLTPLE NDLKFLFGKM APEIDALLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047364.1 | 1e-128 | PREDICTED: zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 9e-49 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | M9Z1Z0 | 1e-127 | M9Z1Z0_EUCGR; C2H2-type zinc finger protein 6 | ||||
STRING | XP_010047364.1 | 1e-128 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 4e-51 | C2H2 family protein |