PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

EcC054570.60

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 355aa MW: 39776.4 Da PI: 7.2351

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054570.60	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.7	1.2e-33	208	265	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnhe EcC054570.60 208 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHE 265 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.0E-35	192	267	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-29	200	267	IPR003657	WRKY domain
PROSITE profile	PS50811	32.282	202	267	IPR003657	WRKY domain
SMART	SM00774	2.4E-39	207	266	IPR003657	WRKY domain
Pfam	PF03106	2.6E-26	208	265	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006468	Biological Process	protein phosphorylation
GO:0071805	Biological Process	potassium ion transmembrane transport
GO:0016020	Cellular Component	membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005267	Molecular Function	potassium channel activity
GO:0005524	Molecular Function	ATP binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
FLLVLFVSVK FLFLIFFLLG MSDDKNNDPF NYNPFYTPDN IGVVSPPEFR FFDDDSTNLS 60 MFTHHQQAPH NPQALNPSPF MSFTGCLRSS VDYNTLSRAF DLSCSSSEVI TPNLDEGGSS 120 KKCSITEPAA TASENGPLSP NSSVSSSSKE AAVEEDGDNS KKDEDDPKTT CNDDDDKSKK 180 GNKPKKKEKR PREPRFAFLT KSEIDHLEDG YRWRKYGQKA VKNSPYPRSY YRCTTQKCTV 240 KKRVERSFQD PSIVITTYEG QHNHECPANL RGNAAAAAAI LSPSFFASPS AIGTTFPHNL 300 LLPQFLQMRN PSRANSSNSM MFYPQTLAPQ QQQFQPPDHG LLHDMLNSVV QKKEP

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

FLLVLFVSVK FLFLIFFLLG MSDDKNNDPF NYNPFYTPDN IGVVSPPEFR FFDDDSTNLS  60
MFTHHQQAPH NPQALNPSPF MSFTGCLRSS VDYNTLSRAF DLSCSSSEVI TPNLDEGGSS  120
KKCSITEPAA TASENGPLSP NSSVSSSSKE AAVEEDGDNS KKDEDDPKTT CNDDDDKSKK  180
GNKPKKKEKR PREPRFAFLT KSEIDHLEDG YRWRKYGQKA VKNSPYPRSY YRCTTQKCTV  240
KKRVERSFQD PSIVITTYEG QHNHECPANL RGNAAAAAAI LSPSFFASPS AIGTTFPHNL  300
LLPQFLQMRN PSRANSSNSM MFYPQTLAPQ QQQFQPPDHG LLHDMLNSVV QKKEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-28	200	268	10	78	Probable WRKY transcription factor 4
2lex_A	1e-28	200	268	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010035922.1	0.0	PREDICTED: probable WRKY transcription factor 71
Refseq	XP_018720202.1	0.0	PREDICTED: probable WRKY transcription factor 71
Swissprot	Q8VWJ2	9e-57	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A059A0X4	0.0	A0A059A0X4_EUCGR; Uncharacterized protein
STRING	XP_010035922.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	2e-49	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]