PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054430.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 90aa    MW: 10115.2 Da    PI: 10.2352
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054430.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.33.1e-181372359
                  EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                  sYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  EcC054430.50  1 SYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 37
                  8***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.1E-8138IPR003657WRKY domain
SuperFamilySSF1182903.66E-14139IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-17139IPR003657WRKY domain
PfamPF031061.6E-12137IPR003657WRKY domain
PROSITE profilePS5081122.676139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
SYYKCTTPGC NVRKHVERAS TDPKAVITTY EGKHNHDVPA ARTSSHSIAN SNIPQVRPHQ  60
TQDNRRTSSG KTDFVNRPIA RLLLKEEQTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-221403978Probable WRKY transcription factor 4
2lex_A3e-221403978Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044462.14e-58PREDICTED: probable WRKY transcription factor 4
SwissprotQ9ZQ701e-27WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A059D7559e-57A0A059D755_EUCGR; Uncharacterized protein
STRINGXP_010044462.12e-57(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.15e-30WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]