PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054379.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 551aa    MW: 59578.3 Da    PI: 7.2737
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054379.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.91.9e-40177252277
                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                   Cqv gC++dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rL+ hnerrrk++
  EcC054379.60 177 CQVFGCNKDLSSSKDYHKRHKVCEVHSKTAQVVVNGVEQRFCQQCSRFHLLAEFDDGKRSCRKRLSVHNERRRKPH 252
                   **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-32173238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.154174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.24E-38175254IPR004333Transcription factor, SBP-box
PfamPF031104.9E-31177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010215Biological Processcellulose microfibril organization
GO:0016049Biological Processcell growth
GO:0030244Biological Processcellulose biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0031225Cellular Componentanchored component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0016757Molecular Functiontransferase activity, transferring glycosyl groups
GO:0016866Molecular Functionintramolecular transferase activity
GO:0046983Molecular Functionprotein dimerization activity
GO:0051499Molecular FunctionD-aminoacyl-tRNA deacylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MESWSYFSEG KALVSDEPVS PFDLLGRSKN AVTNWELRSL PSFGNSVVVS GQEADVGQGF  60
GQLGFQEIIR RQVHPKSPRH VLTDKFDDGN GANQILAALD SFGGEDESTS NLSVSGVDSN  120
TQDSLLIDLK LGRFGESREV PGAKFPQGGK KVLSSSESST PPKRARSVGA NCHTPYCQVF  180
GCNKDLSSSK DYHKRHKVCE VHSKTAQVVV NGVEQRFCQQ CSRFHLLAEF DDGKRSCRKR  240
LSVHNERRRK PHVGVQSGSV GRMLQSYNGS GLERNLLAPT SFLCQDTLAG EKFLNSGPYG  300
MNNWYEHIKA EDGIGLGPPS AIPTPNRHPS AISLISPYKF ERQFALFDGG RVKSTSSGIS  360
SKNNQVPREL GGQNSSHSSF QNTSFGSEDF AVFDTASTVQ GISGIIESGR ALSLLSSLSQ  420
NSSSHSRIPM AQSLVMAGTD YHFSLCGATD KLVDMSSHAS VGVELKKLSS SVMDSAERNL  480
PGHPLVSDLE ISDGILGGSG FVNSKDNLSP EGGGTTMNLL QLSSQLQRVE DQRQSIHLKE  540
QNDVFGCHSI T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271772501184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037257.10.0PREDICTED: squamosa promoter-binding-like protein 18
TrEMBLA0A059A5F60.0A0A059A5F6_EUCGR; Uncharacterized protein
STRINGXP_010037257.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.19e-44SBP family protein