PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054247.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 392aa    MW: 43132.5 Da    PI: 8.0812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054247.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-14162207454
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +h e+Er+RRd++N++f  Lr+++P+       +++Ka+ L  +v+YIk+L
  EcC054247.10 162 SHVEAERQRRDKMNQRFYALRSVVPNV-----SRMDKASLLADTVDYIKEL 207
                   799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-17992IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.549158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17161222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-13161208No hitNo description
PfamPF000101.5E-11162207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17162220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-16164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVLHILGARS YSSEHGLLGK AFRSGGHVWL NGEDRHELEM YECDERVKEA RMYGIKSIAC  60
ISIPNGSGVL ELGSSEIIKE DWSLVHLIKC LFPSRFWNPP VDLRGENQSN EESALADASK  120
RPFSKPVGTG YHNISKKSYR KKIVDDDDKE SSLSPSLLGP LSHVEAERQR RDKMNQRFYA  180
LRSVVPNVSR MDKASLLADT VDYIKELRSR IDALESKLVK YERSSPKRLK IDRAVADVSE  240
TTSLLSNNSS TMASTTLAVP RLSEMAVEVK VLGPEAVVQV DGRARGIGVG GPSNNSSTMA  300
STTLAVPRLS EMAVEVKVLG PEAVVQVRSP NVGHPCARLM DVLEELGLAV QHASMSCVKG  360
MMLHDVVIRT PVDCLVSDHS MRDAIRNKLC VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-22160217663Transcription factor MYC2
5gnj_B7e-22160217663Transcription factor MYC2
5gnj_E7e-22160217663Transcription factor MYC2
5gnj_F7e-22160217663Transcription factor MYC2
5gnj_G7e-22160217663Transcription factor MYC2
5gnj_I7e-22160217663Transcription factor MYC2
5gnj_M7e-22160217663Transcription factor MYC2
5gnj_N7e-22160217663Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058361.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A059C2860.0A0A059C286_EUCGR; Uncharacterized protein
STRINGXP_010058361.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-34bHLH family protein