PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054129.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 450aa MW: 51009.9 Da PI: 6.104

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054129.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.4	3.4e-22	118	212	1	85
trihelix 1 rWtkqevlaLiearr......emeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ee +rr++ +kk++W+ vsk m +rg+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d++ EcC054129.10 118 KWTDEVVRLLIAVVAcvgddgIPEEGFRRKSgilQKKGKWKTVSKIMISRGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCKVVENPSLMDSM 212 7************4444443344444443788********************************************669999999999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.6E-20	116	239	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MDSSGLGGGF LSVSSGGLLD LESSMNRHQQ THLSHSSMSH RQPMNLMTGL ESGSQHVGLI 60 EVGGMMARGT PTNFGKGKAA VGALNAGNVS EEDEPSFDDG TGDSSGKSKK GSPWHRMKWT 120 DEVVRLLIAV VACVGDDGIP EEGFRRKSGI LQKKGKWKTV SKIMISRGCH VSPQQCEDKF 180 NDLNKRYKRL NDILGRGTSC KVVENPSLMD SMPHLSAKAK EDVRKILSSR HLFYKEMCAY 240 HNGQKIPNCQ DFDLQAYSLH LEKGSKDDNA SDEEAEDNED DEDDDDDDGL DDEDDIGVGG 300 CRGRVCDPNK RKMVEEDGPS WPQCSRHEGL QFEMADIFQD PSKTPWERKE WIKRQMLQLQ 360 EQRANIQAQS FELEKQRFKW LRYCSKKNRE LERLRLENER MKLENERGFL ELKHRDLEIN 420 SRRSEASFDP TSHGIDRIQG RDHIDLSRHQ

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MDSSGLGGGF LSVSSGGLLD LESSMNRHQQ THLSHSSMSH RQPMNLMTGL ESGSQHVGLI  60
EVGGMMARGT PTNFGKGKAA VGALNAGNVS EEDEPSFDDG TGDSSGKSKK GSPWHRMKWT  120
DEVVRLLIAV VACVGDDGIP EEGFRRKSGI LQKKGKWKTV SKIMISRGCH VSPQQCEDKF  180
NDLNKRYKRL NDILGRGTSC KVVENPSLMD SMPHLSAKAK EDVRKILSSR HLFYKEMCAY  240
HNGQKIPNCQ DFDLQAYSLH LEKGSKDDNA SDEEAEDNED DEDDDDDDGL DDEDDIGVGG  300
CRGRVCDPNK RKMVEEDGPS WPQCSRHEGL QFEMADIFQD PSKTPWERKE WIKRQMLQLQ  360
EQRANIQAQS FELEKQRFKW LRYCSKKNRE LERLRLENER MKLENERGFL ELKHRDLEIN  420
SRRSEASFDP TSHGIDRIQG RDHIDLSRHQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031815.1	0.0	PREDICTED: uncharacterized protein LOC104421532
TrEMBL	A0A059ABT0	0.0	A0A059ABT0_EUCGR; Uncharacterized protein
STRING	XP_010031815.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16739	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-71	sequence-specific DNA binding transcription factors