PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054041.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 751aa    MW: 80941.8 Da    PI: 6.0487
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054041.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.2e-32324381260
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                   +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  EcC054041.60 324 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCQVKKKVERSH-EGHITEIIYKGAHNHPK 381
                   7****************************************.***************85 PP
2WRKY1048e-33541599159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d k v++tYeg+Hnh+
  EcC054041.60 541 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCTVRKHVERASHDLKSVITTYEGKHNHD 599
                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-28321382IPR003657WRKY domain
SuperFamilySSF1182903.27E-25322382IPR003657WRKY domain
SMARTSM007742.8E-35323381IPR003657WRKY domain
PfamPF031062.2E-24324380IPR003657WRKY domain
PROSITE profilePS5081123.158324382IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-37526601IPR003657WRKY domain
SuperFamilySSF1182901.23E-28533601IPR003657WRKY domain
PROSITE profilePS5081138.469536601IPR003657WRKY domain
SMARTSM007746.1E-38541600IPR003657WRKY domain
PfamPF031067.3E-25542599IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006821Biological Processchloride transport
GO:0007165Biological Processsignal transduction
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0055085Biological Processtransmembrane transport
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005247Molecular Functionvoltage-gated chloride channel activity
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MSGADDNVAV IGDWVPPSPS PRTFFTAMLG DDIGLRSGLE ASGNNKTGGL FLGSQERVTM  60
GNFENKDTKR VGPSGGDHSS ESGLAAEQKG YSRGCLGERL AARAGFNAPR LNTEGIRSAD  120
LSSNPDVRSP YLTIPPGLSP TTLLDSPVFL SNTLAQPSPT TGKFPFIHNN NSRSSGLMLD  180
ANTSKDNPLE ENSSSSFAFK PLGESSSSFF GAGSKMNQAT FPQQSYHRIE VSVQSENSVQ  240
SRNVEATKLQ SQNGSGFQFQ GDFSRSSAEN VAGHDGVPAD QRNFSTVTGD PEHSPPLDEQ  300
QDDEGDQRIS GDSLVGVNGG SPSEDGYNWR KYGQKQVKGS EYPRSYYKCT HPSCQVKKKV  360
ERSHEGHITE IIYKGAHNHP KPPPNRRSVI GGANPFGDMQ LDNPEQMGLQ NATDTDPAWA  420
NMQKTAGMGG SEWRQDNLEV TSSPSDGPEF SNAPTSLQAQ NGGNQLESGD QVDASSTFSN  480
DECDDEQQTH GSVSLAYDGE EDESDSKRRK IEAYATDMSG ASRAIREPRV VVQTTSEVDI  540
LDDGYRWRKY GQKVVKGNPN PRSYYKCTSP GCTVRKHVER ASHDLKSVIT TYEGKHNHDV  600
PAARNSSHVN SGASSAIPTQ CTTSAVQTQV HRPEPSQVHS MMGRYEGPGS LGSFSLPGRQ  660
QLGPGPGFSF AMNPPRLANF AMAGMGPGQG NLPMLPVHPF LAQQHQVHEM GFMLPKGEPK  720
AEPMSEPGPN LSNNSSVYQH IMSRLPLGPQ M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37324602878Probable WRKY transcription factor 4
2lex_A1e-37324602878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061379.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_010061380.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A059BQJ80.0A0A059BQJ8_EUCGR; Uncharacterized protein
STRINGXP_010061379.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]