PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054026.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 168aa    MW: 19813.7 Da    PI: 10.4177
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054026.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-181357348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      WT+eEd+ l+ av+++ g++Wk+Ia++++ +R + qc +rw k+l
     EcC054026.10 13 GWTEEEDKVLIAAVQEYNGKSWKKIAERVP-NRNDVQCLHRWKKVL 57
                     5*****************************.************986 PP
2Myb_DNA-binding62.68.1e-2063109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd+l+v +v + G+ +W+ Ia++++ gR +kqc++rw+++l
     EcC054026.10  63 KGPWSKEEDDLIVALVSKKGTSNWSEIAKHLP-GRIGKQCRERWHNHL 109
                      79******************************.*************97 PP
3Myb_DNA-binding53.94.3e-17115157145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT eE++ l++a+k +G++ W+ Ia+ +  gRt++++k++w+
     EcC054026.10 115 RTAWTREEELTLIEAHKVYGNK-WAEIAKLLK-GRTENMIKNHWN 157
                      679*******************.********9.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.346657IPR017930Myb domain
SMARTSM007171.9E-141059IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-181274IPR009057Homeodomain-like
PfamPF002494.4E-161357IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-231369IPR009057Homeodomain-like
CDDcd001676.86E-121457No hitNo description
PROSITE profilePS5129432.01558113IPR017930Myb domain
SuperFamilySSF466894.12E-3260156IPR009057Homeodomain-like
SMARTSM007172.2E-1862111IPR001005SANT/Myb domain
PfamPF002496.6E-1963109IPR001005SANT/Myb domain
CDDcd001671.58E-1365109No hitNo description
Gene3DG3DSA:1.10.10.607.8E-2870116IPR009057Homeodomain-like
SMARTSM007172.5E-15114162IPR001005SANT/Myb domain
PROSITE profilePS5129421.201114164IPR017930Myb domain
PfamPF002492.1E-15115157IPR001005SANT/Myb domain
CDDcd001673.47E-10117157No hitNo description
Gene3DG3DSA:1.10.10.601.0E-21117164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
RETGPRRRST IGGWTEEEDK VLIAAVQEYN GKSWKKIAER VPNRNDVQCL HRWKKVLDPD  60
LVKGPWSKEE DDLIVALVSK KGTSNWSEIA KHLPGRIGKQ CRERWHNHLK PDIRRTAWTR  120
EEELTLIEAH KVYGNKWAEI AKLLKGRTEN MIKNHWNCSL RKRVEHQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-64121649159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-64121649159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018728613.11e-101PREDICTED: myb-related protein 3R-1
SwissprotQ6R0327e-76MB3R5_ARATH; Transcription factor MYB3R-5
SwissprotQ9S7G71e-75MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A2C9VV922e-90A0A2C9VV92_MANES; Uncharacterized protein
STRINGXP_010058150.11e-118(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.23e-78myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]