PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053809.100
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 786aa    MW: 88616 Da    PI: 5.6547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053809.100genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07426470246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rWT eEd+ l+  +++ G ++W  +a  +g++Rt+ qc  r+q 
    EcC053809.100 426 SRWTVEEDKHLLFSIQEKGINNWFEVAVSLGTKRTPFQCLARYQR 470
                      69*****************************99**********96 PP
2Myb_DNA-binding46.67.8e-15478524148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +  WT++Ed +l  av+ lG g+W ++a+ +  gRt+ qc +rw k l
    EcC053809.100 478 KSEWTPDEDAQLRAAVEILGEGDWQAVASALE-GRTGTQCSNRWKKTL 524
                      578*****************************.***********9975 PP
3Myb_DNA-binding52.11.5e-16532575246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      grWT++Ed++l  avk++G+++W +Ia  ++ gRt  qc++rw +
    EcC053809.100 532 GRWTADEDKRLRVAVKLFGPKNWMKIADFVP-GRTQVQCRERWVN 575
                      8******************************.***********87 PP
4Myb_DNA-binding461.2e-14585626346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eEd  l  a++++G   W++Ia+++   Rt++qc+ rw  
    EcC053809.100 585 PWTPEEDTMLEAAIAEHGYC-WSKIAACLA-PRTDNQCRRRWKV 626
                      8*****************99.*********.9**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.877323419IPR017877Myb-like domain
SMARTSM007170.16327421IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-9330346IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-9392432IPR009057Homeodomain-like
SuperFamilySSF466893.23E-12401458IPR009057Homeodomain-like
PROSITE profilePS500908.792420472IPR017877Myb-like domain
SMARTSM007171.7E-6424474IPR001005SANT/Myb domain
PfamPF002491.6E-5426470IPR001005SANT/Myb domain
CDDcd001673.05E-5427472No hitNo description
Gene3DG3DSA:1.10.10.607.5E-13433483IPR009057Homeodomain-like
SuperFamilySSF466892.37E-19457526IPR009057Homeodomain-like
PROSITE profilePS5129416.624473524IPR017930Myb domain
SMARTSM007177.2E-15477526IPR001005SANT/Myb domain
PfamPF002492.9E-13478523IPR001005SANT/Myb domain
CDDcd001679.02E-12480524No hitNo description
Gene3DG3DSA:1.10.10.601.6E-16484527IPR009057Homeodomain-like
PROSITE profilePS5129421.873525581IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-18528577IPR009057Homeodomain-like
SuperFamilySSF466891.15E-28529624IPR009057Homeodomain-like
SMARTSM007171.8E-14530579IPR001005SANT/Myb domain
PfamPF002493.5E-15532575IPR001005SANT/Myb domain
CDDcd001672.73E-12533577No hitNo description
Gene3DG3DSA:1.10.10.606.2E-18578625IPR009057Homeodomain-like
SMARTSM007179.1E-14582630IPR001005SANT/Myb domain
PfamPF002494.6E-13584625IPR001005SANT/Myb domain
PROSITE profilePS5129417.577585632IPR017930Myb domain
CDDcd001671.82E-12585628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006397Biological ProcessmRNA processing
GO:0007031Biological Processperoxisome organization
GO:0016579Biological Processprotein deubiquitination
GO:0005779Cellular Componentintegral component of peroxisomal membrane
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0005515Molecular Functionprotein binding
GO:0005525Molecular FunctionGTP binding
GO:0008270Molecular Functionzinc ion binding
GO:0036459Molecular Functionthiol-dependent ubiquitinyl hydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MSHGLGRGGG GSDDDDDDDE VSSGSEDGGA SFDEDMEALR RACMLTGADV VRADGLDFAA  60
PDPGSAADDD DDDDDEDDLQ LVRRLQERFS ADLANPLTLK PLASLHPPTG AAAAATSDED  120
EDDFETLRAI QNRFCAYDHS NTENSKNGLS STGTMSNAMN VNVFGDCKAF PDDEDAHDSN  180
QTLHKDECQP SAIIERHQPA QKQQGLAKYS SFPKSGQIFI EALKKNRSCQ KLIRSKLIQI  240
EARIEEIKKL KERVKILKDF QISCRQRTGK ALSQKKDPRV QLISAWKIIK DSKVNDRKVS  300
AMHYGPAENS HLSSYRMALT RFPLSLQRSK WSEVEKENLG KGIKQQFQET LLQISLERFS  360
VSDGDQYGFE DILSSIRDLD ITPESIREFL PKVNWDQLAS LYIPGRSGAE CEARWLNWED  420
PLINHSRWTV EEDKHLLFSI QEKGINNWFE VAVSLGTKRT PFQCLARYQR SLNPCILKSE  480
WTPDEDAQLR AAVEILGEGD WQAVASALEG RTGTQCSNRW KKTLHPARQR VGRWTADEDK  540
RLRVAVKLFG PKNWMKIADF VPGRTQVQCR ERWVNSLDPS LNWNPWTPEE DTMLEAAIAE  600
HGYCWSKIAA CLAPRTDNQC RRRWKVVFPN EVPLLREARK VQKAALVRNF VDRESERPAL  660
GPGDFLPLPM TSCVSDPDSL NPSMKQKTGF SDQEVGNKRP RVDSQLDLEQ AGEIISCNEE  720
ERVTRDNTVS KKRKLSNARV RKDNHNERSK DQQSSQPDPS SSLTIKGKNM EGHDTANMTE  780
KKNIPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-303946326159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-303946326159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032570.10.0PREDICTED: uncharacterized protein LOC104422048 isoform X1
TrEMBLA0A059CZT70.0A0A059CZT7_EUCGR; Uncharacterized protein
STRINGXP_010032570.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1