PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053777.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 248aa    MW: 28670.8 Da    PI: 6.3687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053777.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-17855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
     EcC053777.10  8 KGPWTEQEDFKLVCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding59.86.1e-1961106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l v++++++G++ W++Iar+++ gRt++++k++w++y+
     EcC053777.10  61 RGKMTPQEEKLVVELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTYM 106
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.64355IPR017930Myb domain
SuperFamilySSF466892.77E-296102IPR009057Homeodomain-like
SMARTSM007174.4E-15757IPR001005SANT/Myb domain
PfamPF002491.2E-15855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-19962IPR009057Homeodomain-like
CDDcd001672.12E-101055No hitNo description
PROSITE profilePS5129427.27856110IPR017930Myb domain
SMARTSM007173.4E-1760108IPR001005SANT/Myb domain
PfamPF002494.3E-1761105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-2463109IPR009057Homeodomain-like
CDDcd001678.45E-1263106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006810Biological Processtransport
GO:0009231Biological Processriboflavin biosynthetic process
GO:0005840Cellular Componentribosome
GO:0016020Cellular Componentmembrane
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003935Molecular FunctionGTP cyclohydrolase II activity
GO:0005215Molecular Functiontransporter activity
GO:0008686Molecular Function3,4-dihydroxy-2-butanone-4-phosphate synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAQEEIRKGP WTEQEDFKLV CFVGLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGKMTPQEEK LVVELHAKWG NRWSRIARKL PGRTDNEIKN YWRTYMRKKA QERKHPIPPS  120
SSSSSSSNCY SSTSNNPPAD SLPFQATGEV SYYDTGGPNV STPTRKKSEE KEDHEKGDSM  180
DDIWKDITAS EETNDITQSY NCFSDESYSF TCPQMASPAW ELYSDSLWKM DEEEGEMLLS  240
MSNHYSSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2851101105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033162.10.0PREDICTED: transcription factor MYB48 isoform X2
SwissprotQ9LX827e-92MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A059AGB71e-153A0A059AGB7_EUCGR; Uncharacterized protein
STRINGXP_010033162.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.19e-90myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]