PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053775.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 307aa    MW: 34869.6 Da    PI: 7.8681
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053775.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.95.1e-34184241259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrKYGqK vk+s fprsYYrCts+gC+vkk+vers +dp++v++tYeg+Hnh+
  EcC053775.20 184 EDGYRWRKYGQKAVKNSAFPRSYYRCTSQGCMVKKRVERSFQDPSIVVTTYEGQHNHH 241
                   8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-34168243IPR003657WRKY domain
SuperFamilySSF1182901.57E-29176243IPR003657WRKY domain
PROSITE profilePS5081131.927178243IPR003657WRKY domain
SMARTSM007745.9E-41183242IPR003657WRKY domain
PfamPF031061.2E-26184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0046777Biological Processprotein autophosphorylation
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSEGKSNPYN IFDPFNESFS PFRTSNDGNY PFFHNNHPQQ QHLLEATQDH SSAPLNSTFR  60
AFLDGSMDYN TLSRAFDMSC CSSSEVISTD DSRKGASILS KNNNQSTPKN SSSALSSSSE  120
EMATVGSEDK DKGKIIQDEQ STGCHEDHGR EEKSKNGDKS KKKEKRPRQP RFAFLTKSEI  180
DNLEDGYRWR KYGQKAVKNS AFPRSYYRCT SQGCMVKKRV ERSFQDPSIV VTTYEGQHNH  240
HSPATLRASN FAGMLMPPNL RSTCLMEPPY FQQELLAQLL QMENNRPDDP MSKLYQNLDP  300
GLQFRLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-261762441078Probable WRKY transcription factor 4
2lex_A1e-261762441078Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053561.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A059DGX61e-179A0A059DGX6_EUCGR; Uncharacterized protein
STRINGXP_010053561.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-44WRKY DNA-binding protein 71