PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053768.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 424aa    MW: 48733.4 Da    PI: 8.1747
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053768.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.5e-162751897
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                  +pkkfa+++g +   s  ++l  +++  W v+l  rk+++r ++ +GW++F + + + +g f++Fk++g+s+f  +v v+
  EcC053768.40  2 IPKKFARKYGDE--LSDVVRLVASDSSIWLVEL--RKHGSRLWFHDGWQRFLEHHSIHSGHFLIFKYEGDSTF--HVYVY 75
                  9********866..8889***************..**********************************9999..66665 PP
2B366.53.8e-21285379199
                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   f+ ++ ps+v ++ ++ lp +f+  h +g    s+++tl+ ++g++W+v++   +++g+  +++GW+eFv +n+L+ gD+++F+l +r++  l+v++
  EcC053768.40 285 FQVIMRPSYVREKFLVNLPASFIGMHlKG---DSRDITLQVSDGKKWRVRCLLFNGKGK--ISRGWREFVADNKLEIGDVCIFELLRREDILLKVTI 376
                   88999******************999544...4679***************98888888..89***********************999999****9 PP

                   E-S CS
            B3  97 frk 99 
                   fr 
  EcC053768.40 377 FRV 379
                   985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.395178IPR003340B3 DNA binding domain
PfamPF023621.1E-12274IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-18276IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-14276No hitNo description
Gene3DG3DSA:2.40.330.101.7E-18276IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-5278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-25277378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-25278378IPR015300DNA-binding pseudobarrel domain
CDDcd100175.64E-22283378No hitNo description
PfamPF023624.3E-19285378IPR003340B3 DNA binding domain
PROSITE profilePS5086315.467285380IPR003340B3 DNA binding domain
SMARTSM010191.3E-18285380IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0034968Biological Processhistone lysine methylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
GIPKKFARKY GDELSDVVRL VASDSSIWLV ELRKHGSRLW FHDGWQRFLE HHSIHSGHFL  60
IFKYEGDSTF HVYVYNLTAS WERNSHNPLG SKEFISSRQF PMHTKKNQDT DSVVEIRDLC  120
CACPICSCLK DKCFQECRGW RMTNRIHDGV NIIRPEPVAD WEVFHQDKGV QVDEVELQST  180
FDGVGIDRLF QKNRYRKRRK QINESSKHHN LGTYVNALSY LLSLYTYDEV ADESEPSVMR  240
KDGGELPTVE ASYGKSSREC NAAIIEARGM AIRAAHTYEP NNPFFQVIMR PSYVREKFLV  300
NLPASFIGMH LKGDSRDITL QVSDGKKWRV RCLLFNGKGK ISRGWREFVA DNKLEIGDVC  360
IFELLRREDI LLKVTIFRVP EIGVGAYCCA SYSGGSSSMK LTFDSSQVSE FQKHGEHLLV  420
PVFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-3125338117144B3 domain-containing transcription factor VRN1
4i1k_B2e-3125338117144B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059B1Q41e-120A0A059B1Q4_EUCGR; Uncharacterized protein
STRINGXP_010026781.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-32B3 family protein