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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC053655.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 107aa MW: 12334.4 Da PI: 11.1434 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.2 | 1.6e-06 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H EcC053655.30 30 FVCEICNKGFQRDQNLQLHRRGH 52 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.86E-6 | 28 | 53 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-6 | 29 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 30 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 9.3E-6 | 30 | 52 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 71 | 101 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0042545 | Biological Process | cell wall modification | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0004857 | Molecular Function | enzyme inhibitor activity | ||||
GO:0030599 | Molecular Function | pectinesterase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
KKKRNLPGTP DPDAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ 60 RSKEVVKKKV YICPEKTCVH HDPSRALGDL TGIKKHFSRK HARRSGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046700.1 | 5e-69 | PREDICTED: zinc finger protein JACKDAW | ||||
Swissprot | Q9LVQ7 | 1e-62 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
Swissprot | Q9SCQ6 | 9e-63 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A067EAZ3 | 9e-65 | A0A067EAZ3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A396JNC6 | 1e-64 | A0A396JNC6_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | XP_010046700.1 | 2e-68 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 4e-65 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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