PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053575.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 563aa    MW: 62690 Da    PI: 7.9622
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053575.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.3e-19104150148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++d+v  +G+  W++Ia+ ++ gR +kqc++rw+++l
     EcC053575.10 104 KGPWTQEEDDKIIDLVSSYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 150
                      79******************************.*************97 PP
2Myb_DNA-binding37.65e-12156214146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..............TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..............kgRtlkqcksrwqk 46 
                      + +WT eE++ l +a++  G++ W+ Ia+ ++              k Rt++++k++w++
     EcC053575.10 156 KEAWTLEEELALMHAHRVNGNK-WAEIAKVLPgvwqffhrilrlrkKFRTDNSIKNHWNS 214
                      579*******************.***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129432.61199154IPR017930Myb domain
SuperFamilySSF466894.59E-24101212IPR009057Homeodomain-like
SMARTSM007171.4E-17103152IPR001005SANT/Myb domain
PfamPF002495.2E-18104150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-27105157IPR009057Homeodomain-like
CDDcd001671.17E-15106150No hitNo description
SMARTSM007179.2E-11155218IPR001005SANT/Myb domain
PROSITE profilePS5129415.315155220IPR017930Myb domain
PfamPF002492.9E-10156214IPR001005SANT/Myb domain
CDDcd001676.42E-8158216No hitNo description
Gene3DG3DSA:1.10.10.602.4E-20158220IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0004252Molecular Functionserine-type endopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
VRKNTSNCYK HTDNSQILNL SVFPGFIYIY IIGFSKEEMV QFITFSWGFT TQSWSFEMLS  60
FMGHLFFLKS NRESVMSDAE HFPDRSEVQC LQGGKKLLNP DLVKGPWTQE EDDKIIDLVS  120
SYGPTKWSLI AKSLPGRIGK QCRERWHNHL NPDIKKEAWT LEEELALMHA HRVNGNKWAE  180
IAKVLPGVWQ FFHRILRLRK KFRTDNSIKN HWNSSLKKKL DFYLATGKLP PVAKSGLQNG  240
SKDASKPTSA KRLVGCNKGA NLNPQTSLGN GGTCKLEEEN QDKLELMARH QEACESSSIL  300
PSESADSGSA EFKSRIDVSS NLEVLAQSED SGACDKSDYK DVGTTPPEQA LVYGFLCYEP  360
PPLESCIPLD SEMNTHLLNQ TCNSSPASPA SFLTPPCERN GVFCTQSPES ILRLAAETFP  420
NTPSILRKRK TQVAKHLFSN KTTKVDGEIV KDRVDSPDVG SNGSLEKSMS QNTSVYDSPC  480
LSNGASATMC NGGAFSASPP YRLRSKRTAL LKSVEKQLDF TFEEMKLDGS TKLVDVPMKE  540
NVHNAEGPSS HVTKMVSIQE LKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-537922033159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-537922033159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037835.10.0PREDICTED: transcription factor MYB51
TrEMBLA0A059A7920.0A0A059A792_EUCGR; Uncharacterized protein
STRINGXP_010037835.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-105myb domain protein 3r-5