PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053542.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 383aa    MW: 41205.7 Da    PI: 6.271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053542.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-07167188223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    C +Cgk F+r  nL+ H+r H
  EcC053542.20 167 FCDICGKGFKRDANLRMHMRAH 188
                   6*******************99 PP
2zf-C2H211.30.0011283298621
                   TTEEESSHHHHHHHHH CS
       zf-C2H2   6 CgksFsrksnLkrHir 21 
                   Cg++Fsrk+ L  H+ 
  EcC053542.20 283 CGTTFSRKDKLFGHMA 298
                   **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-6163189No hitNo description
PROSITE profilePS5015711.905166193IPR007087Zinc finger, C2H2
SMARTSM003550.0017166188IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-6166188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
SMARTSM0035540213246IPR015880Zinc finger, C2H2-like
SMARTSM0035536251273IPR015880Zinc finger, C2H2-like
SMARTSM00355200279303IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006520Biological Processcellular amino acid metabolic process
GO:0009058Biological Processbiosynthetic process
GO:0010150Biological Processleaf senescence
GO:0005777Cellular Componentperoxisome
GO:0009536Cellular Componentplastid
GO:0016020Cellular Componentmembrane
GO:0003676Molecular Functionnucleic acid binding
GO:0008483Molecular Functiontransaminase activity
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MNTPAAEEAH PAPPEPSGAA AAAAAAGGSV PVPVGDGDPR VPLLNLATVS VKMDSVQQFL  60
SQSLRSNALL RKDQMDMVSA EIASAIHQVV VNGAALLACF QNPSPDPEPW RADPKLLPPA  120
PAAVNPVDPA VARPPEVELK DEKDELDADC EIVELDAVEL LAEHVHFCDI CGKGFKRDAN  180
LRMHMRAHGN QFKTPEALAK PERCADAPRK TRFSCPFEGC SRNKGSNKFR PLKSVICVKN  240
HFKRSHCPKM FACNRCNKKS FSVLADLKSH SKHCGQSRWR CSCGTTFSRK DKLFGHMALF  300
DGHMPAVAGD HEEKASASGV VAMEDDGDEN AKVVEEEELA TNSVDGGFFE GLLDGFGSLD  360
GYSIQDLLNG MGNGMQGFPG VRH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048109.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A059CP400.0A0A059CP40_EUCGR; Uncharacterized protein
STRINGXP_010048109.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-74C2H2 family protein