PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC053489.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 356aa MW: 38290 Da PI: 8.2447 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48 | 1.6e-15 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +ien++ r+ ++ kRr+g++KK + LS+LC+++ + ii+s++ EcC053489.50 10 FIENDTSRKASLKKRRQGLMKKVSQLSTLCGVNTCAIIYSPD 51 8***************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.918 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.6E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.58E-31 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 3.79E-23 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-16 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MARRKVKLAF IENDTSRKAS LKKRRQGLMK KVSQLSTLCG VNTCAIIYSP DSNEPVFWPS 60 RPEVEQLLER YQGFSELVRS RKMLNHESYL KEQINKLIGQ KNKLVVKNKG LKNTYLMQQL 120 CLYGKTTSEF ANDEMCSLFY YVHEKNKEIE KRIELLERTD GAPRSGSAPS AIDGPVVEEE 180 IILEAKGGGI GNANEDNTGD ASSSLDQWFI DMMKTGNTGS GSGSKKDKLY PLACLTGSAS 240 TYNQVIALNF IKENDGIGSG NWANRIGPVN GDAGGSRGNN IVLSQGPSGV IPGRGDSVTY 300 GHVGGSASNN AATPYQGYAG DMSNGSGIIC PNGDAGGCGD GATGYGVRLF NQWDAG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RRKVKLAFIENDTSRKASLKKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_010024022.1 | 1e-140 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 4e-27 | M-type_MADS family protein |