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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
EcC053469.10 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 166aa MW: 18997.8 Da PI: 9.6548 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EcC053469.10 | genome | ECGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.1 | 1.3e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rien + +qvtfskRr+g+lKKA+ELSvLCdaevaviifs++g+lye+ss
EcC053469.10 10 RIENATSQQVTFSKRRAGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 59
8***********************************************96 PP
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| 2 | K-box | 46.4 | 1.7e-16 | 85 | 146 | 11 | 72 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72
e+ +l+qe + ++++ie L+ ++R+l G++L+s+s+ ++q++ +qLe+sl ++R++K +
EcC053469.10 85 EQYILRLKQETTDMERKIELLEVSLRKLSGQCLGSCSIDDIQRMGDQLERSLGSVRERKVHA 146
55566899***************************************************876 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 166 aa
Download sequence Send
to blast |
MARGKVQMRR IENATSQQVT FSKRRAGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFSST 60
SEIRKTIDRY RRSTNDAATY QASMEQYILR LKQETTDMER KIELLEVSLR KLSGQCLGSC 120
SIDDIQRMGD QLERSLGSVR ERKVHASLAY LSSSLSEVDV LRTFVE
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 2e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 2e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-18 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
