PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052944.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 80aa MW: 9324.91 Da PI: 10.6574

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052944.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.4	1.2e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+e+s+ EcC052944.10 9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEFST 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.875	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.5E-39	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.25E-37	2	61	No hit	No description
SuperFamily	SSF55455	1.31E-29	2	71	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-31	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEFSTD 60 SWFVLDPFFS FFWDFSALFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-19	1	71	1	72	MEF2C
5f28_B	3e-19	1	71	1	72	MEF2C
5f28_C	3e-19	1	71	1	72	MEF2C
5f28_D	3e-19	1	71	1	72	MEF2C
6bz1_A	4e-19	1	71	1	72	MEF2 CHIMERA
6bz1_B	4e-19	1	71	1	72	MEF2 CHIMERA
6bz1_C	4e-19	1	71	1	72	MEF2 CHIMERA
6bz1_D	4e-19	1	71	1	72	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029407.1	8e-36	PREDICTED: truncated transcription factor CAULIFLOWER A
Swissprot	Q6E6S7	2e-35	AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBL	A0A218VVI9	2e-36	A0A218VVI9_PUNGR; Uncharacterized protein
TrEMBL	A0A438E383	4e-36	A0A438E383_VITVI; Agamous-like MADS-box protein AGL8
STRING	XP_004172815.1	5e-37	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	1e-35	AGAMOUS-like 8

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]