PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

EcC052802.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 272aa MW: 29936.2 Da PI: 10.0122

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052802.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.6	5.9e-13	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +++++G g Wk I + +R+ ++k++w+++ EcC052802.10 5 KLKWTKEEEEALLAGIAKHGAGKWKNILKDPEfapalVNRSNIDLKDKWRNL 56 689***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.624	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.01E-15	3	58	IPR009057	Homeodomain-like
SMART	SM00717	9.1E-8	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-9	5	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-14	5	56	IPR009057	Homeodomain-like
CDD	cd11660	5.64E-21	7	56	No hit	No description
SMART	SM00526	6.0E-7	90	176	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	19.231	112	181	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	1.6E-5	119	174	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	2.86E-11	119	190	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	8.9E-9	120	182	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGNQKLKWTK EEEEALLAGI AKHGAGKWKN ILKDPEFAPA LVNRSNIDLK DKWRNLSVGT 60 SGQGSRDKQR LSKVKSLMAA PQSSTVPLNP QAHAASTDVA LVNSSNSFQD GKNYSLDNTL 120 IFDALSSPKG PNGSDIGAIV SFIEQRQEVP PNFKRLLSSK LRRLVSQGKL EKVEKYYKIS 180 RQAPLGTKTS VPEQKVVRPL PSQQLALSSH ETMKEVAMAA AYNVVEAENK SFLAAEAVKE 240 AERVSKMADD AVMTLQLVQE IYEQCKFNPL TL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010033763.1	0.0	PREDICTED: telomere repeat-binding factor 4 isoform X2
TrEMBL	A0A059AIS4	0.0	A0A059AIS4_EUCGR; Uncharacterized protein
STRING	XP_010033761.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	1e-66	MYB_related family protein