PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052648.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 677aa    MW: 78788.1 Da    PI: 7.1207
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052648.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.91.3e-261297291
          FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                  fY+eYA+ +GF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk+++dgkw v+++++eHnHel p
  EcC052648.30 12 FYKEYARAAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWFVYSFVKEHNHELLP 97
                  9***************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-241297IPR004330FAR1 DNA binding domain
PfamPF105511.8E-28210302IPR018289MULE transposase domain
PROSITE profilePS5096610.534490526IPR007527Zinc finger, SWIM-type
PfamPF044348.5E-8494524IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-6501528IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046373Biological ProcessL-arabinose metabolic process
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0046556Molecular Functionalpha-L-arabinofuranosidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MEFESHEDAY AFYKEYARAA GFGTAKLSSR RSRASKEFID AKFSCIRYGN KQQSDDAINP  60
RPSPKIGCKA SMHVKRRQDG KWFVYSFVKE HNHELLPAQV HFFRSHRDAD LVKNDVRLRK  120
RKNLSSMSKM FSSYQHLDNL DNYLRNPHDK GRSLVLEAGD AQLLFEFFMH MQEQNPKFFY  180
AIDLNEEHRL RNVFWVDAKG IEDYSKFGDV VSFDTTYFAN KYKMPLVLFT GVNHHGQPTL  240
FGSALIADDT VYTFAWLMQT WLVAMGEQAP QVILTDQNNA IKLATAAIFP HTRHCFCLWH  300
ILDRIPRELE YLGVWQDTIV AKFNKCIFGS WSEAEFDKRW WKLLDRFNLR EVEWVQLLYQ  360
DRMQWAPTFM RDISFAGLSA FSRAESLNSW FDKYVNGETS LREFIEKYKV ILEDRYEEEA  420
KADFDAWHEA PELKSPSPFE KQMSLVYTHE IFRKFQIEVL GAAACHLKKE SEDERATIYT  480
VKEFEDDRNY VVEWNESKSS IYCSCHSFEY KGYLCKHAMI VLQMSGVFSI PSRYILQRWT  540
NAALSRHPIG EKSEDMQSKV RRYNDLCRRA IILGEEGSLS QESYDIALCA IMAALKQCSS  600
VNTPAENEAR PNNSTVHATC NAEEENQCST SKEQVPDPKV SNRSKNTSRK GKVSDSISVQ  660
IFRSHLCDEH VCTAFIQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045001.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4
RefseqXP_010045002.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4
RefseqXP_010045003.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A059D8S10.0A0A059D8S1_EUCGR; Uncharacterized protein
STRINGXP_010045001.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]