PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052629.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 188aa    MW: 21744.4 Da    PI: 8.8079
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052629.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed++++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+ +++         weF ++ F+kg++ell++i+
  EcC052629.20  27 FLLKTYMLVEDPATDDVISWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKIATSR---------WEFCNDMFRKGERELLCEIR 114
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
  EcC052629.20 115 RRKA 118
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3620111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5223116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3323116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.0E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEANADFISE KKGLLLEYVR KSTPPPFLLK TYMLVEDPAT DDVISWNADG TAFVVWQPAE  60
FARDLLPTLF KHSNFSSFVR QLNTYGFRKI ATSRWEFCND MFRKGERELL CEIRRRKAWA  120
NKPRSNPSTQ AHQDNNHNHS SDEDQRSSST SSSSEYSNLI HENKRLKKEN GALSSELTGM  180
KYKCKELL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-212211615120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056951.11e-140PREDICTED: heat stress transcription factor B-3
SwissprotO222307e-68HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A059DIB71e-139A0A059DIB7_EUCGR; Uncharacterized protein
STRINGXP_010056944.11e-139(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-61heat shock transcription factor B3