PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051768.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 567aa    MW: 64352.9 Da    PI: 7.3134
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051768.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS221.25.1e-683315662240
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++lL++cA+a++s+d++ a+alL++++++asp g+ +qRla+yf+++L+arla+++s++y+ l  ++t+    ++ l+a++l+  ++P+ + s+ + 
  EcC051768.10 331 RTLLIQCAQAMASNDHRSANALLNEIRKHASPFGNGTQRLAHYFANGLEARLAGTGSQIYRGLVNRKTT---AADMLNAYQLYLAACPFQRYSNAVP 424
                   689************************************************************999999...9************************ PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                      Il+ v+ + ++H+iDf+i +G+ Wp+L+q L++Rp + p+lRiTg++ p++g   +e+++etg+rLa++Ae+++vpfe+++ +akr+e +elee
  EcC051768.10 425 VFSILDTVADKMKIHVIDFGILYGFRWPTLIQRLSQRPCP-PKLRITGIDLPQPGfrPAERVKETGQRLANYAESFNVPFEYSA-IAKRWEFIELEE 519
                   *************************************876.9************9*****************************.7*********** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                   L+++++E ++V+++++ ++l+de+ + es rd vL+l+++ +P++++
  EcC051768.10 520 LKIDKDELTIVSCMFRFENLFDETIAEESSRDIVLNLIRRAQPDLFI 566
                   *******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.458304567IPR005202Transcription factor GRAS
PfamPF035141.8E-65331566IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDPLMGALYP SDGFQSDDQS ISAVVDRCLV SRPTFQSAPN RYGDMHHLVD VAPFSNDCRD  60
TLDTEETEFS NAVFEYISRI LMEEDIEEKT CMLQESLDLL SAEKSFYEVI GKKYPPSPEP  120
SRTNCITYND KHSNDSLLDS TRYTSTIGSR KTGYSANIGR VQNPSNYVTM SFEKDIRPAA  180
FQPNRGGNAQ RLDLWGENQF VRQFRMGIEE SSKFLPNQAP TKLLPLKPNR KIDKRDCLSA  240
SKRKESLHRE EGNMEERSSK QAFVHEESVL RSDAFDIVLL NGQGEGLAHL MNLRASLKNG  300
ANEIEHKIQE PKAGRGRSKK KRGKVEVVDV RTLLIQCAQA MASNDHRSAN ALLNEIRKHA  360
SPFGNGTQRL AHYFANGLEA RLAGTGSQIY RGLVNRKTTA ADMLNAYQLY LAACPFQRYS  420
NAVPVFSILD TVADKMKIHV IDFGILYGFR WPTLIQRLSQ RPCPPKLRIT GIDLPQPGFR  480
PAERVKETGQ RLANYAESFN VPFEYSAIAK RWEFIELEEL KIDKDELTIV SCMFRFENLF  540
DETIAEESSR DIVLNLIRRA QPDLFIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2833656425245Protein SCARECROW
5b3h_A3e-2833656424244Protein SCARECROW
5b3h_D3e-2833656424244Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721242.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_018721244.10.0PREDICTED: scarecrow-like protein 9
TrEMBLA0A059A8A90.0A0A059A8A9_EUCGR; Uncharacterized protein
STRINGXP_010039203.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-125GRAS family protein