PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051631.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 409aa    MW: 45198.5 Da    PI: 5.9378
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051631.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox192.5e-063603872855
                   HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
      Homeobox  28 eereeLAkklgLterqVkvWFqNrRake 55 
                   +++  LA+ +gL+++q+ +WF N+R ++
  EcC051631.10 360 ADKLALAEATGLDQKQINNWFINQRKRH 387
                   66778*******************9885 PP
2ELK36.69.3e-13279300122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELK+ LlrKYsgy+g Lk+EFs
  EcC051631.10 279 ELKDKLLRKYSGYIGALKHEFS 300
                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.7E-21135179IPR005540KNOX1
PfamPF037904.8E-21136178IPR005540KNOX1
SMARTSM012561.3E-20187238IPR005541KNOX2
PfamPF037911.2E-20192237IPR005541KNOX2
SMARTSM011881.9E-7279300IPR005539ELK domain
PfamPF037897.6E-10279300IPR005539ELK domain
PROSITE profilePS5121310.633279299IPR005539ELK domain
SMARTSM003898.8E-4301394IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-24304391IPR009057Homeodomain-like
SuperFamilySSF466893.72E-9358397IPR009057Homeodomain-like
CDDcd000867.76E-8359390No hitNo description
PfamPF059201.4E-9359386IPR008422Homeobox KN domain
PROSITE profilePS500719.718361390IPR001356Homeobox domain
PROSITE patternPS000270365388IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEERPIKVCS YLIANETVNF PADARHKGAH PPRPRSRCIF YIYRTTDTGA AHELFAPLIY  60
AYINGRAVRT AHFHGGSTGG PAGFSGRNAT SYHLSGSDHQ LAPGSSAVSD AGSSMVVVAD  120
GEGEEGEEDD GDVSTTLRAK IATHPLYPKL LEAYVDCHKV GAPPEVAGLL DEIRRQSDDI  180
SMVTGSVTDC RGLDPELDEF MGTYYSMLVK YKSDLSKPFE EATSFLNTMR DQLNTLCHGS  240
SSSTNYLHVT EDCAGSSEED LSGGEIDVLE GSQSSEDREL KDKLLRKYSG YIGALKHEFS  300
KKKKKGKLPR EARQLLLDWW SIHYNWPYPT VKHLHSIHTG LVDVGGELIA LGVPQCVQEA  360
DKLALAEATG LDQKQINNWF INQRKRHWKQ DENTQPGIME SLYGPFFAN
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282076.11e-115PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS69e-95KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLD7SHP31e-114D7SHP3_VITVI; Uncharacterized protein
STRINGVIT_17s0000g08710.t011e-114(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.14e-94KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]