PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051466.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 632aa    MW: 69553.1 Da    PI: 9.9405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051466.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-0595117123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++C+k F r  nL+ H r H
  EcC051466.40  95 FVCEICNKGFQRDQNLQLHRRGH 117
                   89*******************88 PP
2zf-C2H215.26e-05171193123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC +C+k +  +s+ k H++t+
  EcC051466.40 171 WKCDKCSKKYAVQSDWKAHQKTC 193
                   58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.9E-894117No hitNo description
Gene3DG3DSA:3.30.160.602.2E-594117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01795117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94995117IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM0035577136166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-5159192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.9E-8166192No hitNo description
SMARTSM0035594171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006415Biological Processtranslational termination
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0000287Molecular Functionmagnesium ion binding
GO:0005524Molecular FunctionATP binding
GO:0010333Molecular Functionterpene synthase activity
GO:0016149Molecular Functiontranslation release factor activity, codon specific
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
CQISQVKKGV SLQETLGRKS TNMRNNSCKA TFMGQTRNLP ARSTIAAPPR SNSRSRRRGI  60
CRGHQAINSS TPFEADPNAE VVALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP  120
WKLRQRQPNE VKKRVYICPE PTCVHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY  180
AVQSDWKAHQ KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALAEENNKVN QGLHQQMPNH  240
DLMPSSMPMI NTNTSSSNST MFLNDFNPTL DSKNPLKSLP KNLVPMPFKP NANNLSSMSV  300
MSPPSMFSTT SGTLFGSLRG NTISSSSSLQ LSSNTTSSGF NYLQEAKAGG GGLLAAGSAS  360
SAHMSATALL QKAAQMGASA SNSNNSPMMH QKSCMAGPDQ QQQQQQPQLI PIGSAPPLPI  420
RPSSMLPYSI SNVPHQHLSN NMDTASFNHH PHHGFQSPPP LPHPDQFNPL LQKSNRHDHH  480
HNPMTHVMES ANAMISSEMG MFSSMFVGGT DHHNMKSTPS VVVDHEDSSS TSFGQGRTQS  540
EKNVPIGSMV FGGNSNNNNS SSNGKNDGVT LLDFLGLEES RHVGNLHEQQ QQQQQRMVME  600
GMSQQRLPAM TGHFAQQLSH AESAMEKPIW DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33167230366Zinc finger protein JACKDAW
5b3h_F1e-33167230366Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026140.10.0PREDICTED: protein indeterminate-domain 2
TrEMBLA0A059AX310.0A0A059AX31_EUCGR; Uncharacterized protein
STRINGXP_010026140.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-88indeterminate(ID)-domain 2