PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051252.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 251aa    MW: 27813.8 Da    PI: 9.3014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051252.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.63.4e-25114175159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   +dDg++WrKYGqK++ +++fprsYYrCt++   +Cp++k+v+  ++dp + + tY g+H+++
  EcC051252.40 114 VDDGHAWRKYGQKSILNTDFPRSYYRCTHKveqKCPATKQVQMISKDPPMYQSTYYGRHTCK 175
                   59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-25107175IPR003657WRKY domain
SuperFamilySSF1182908.89E-25109175IPR003657WRKY domain
PROSITE profilePS5081120.312109172IPR003657WRKY domain
SMARTSM007742.8E-35114176IPR003657WRKY domain
PfamPF031061.1E-24115175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015914Biological Processphospholipid transport
GO:0016021Cellular Componentintegral component of membrane
GO:0000287Molecular Functionmagnesium ion binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004012Molecular Functionphospholipid-translocating ATPase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEASSFGHRK VKAMKELVRG QDLAKRLQKS ISRGGSPSSA EDDAQELVAS FTKALSVLSH  60
SESDDGSQVS DGQNDPAARS DGSSEESSKR KDGRGRYKRR RPSDTWSKIS PTLVDDGHAW  120
RKYGQKSILN TDFPRSYYRC THKVEQKCPA TKQVQMISKD PPMYQSTYYG RHTCKNLLNS  180
PQIIVDHEDE DSKKLVSFSG NAASSQNNAF FSSLSFGLIK EEPRQETVPG GDHALFRSQP  240
LPPPPPPPPS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-20114175869OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036006.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A059A1560.0A0A059A156_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010036006.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-35WRKY DNA-binding protein 70