PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051116.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 450aa    MW: 48865.2 Da    PI: 5.6293
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051116.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.3e-31222280259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  EcC051116.20 222 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 280
                   699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.787216282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-31218282IPR003657WRKY domain
SuperFamilySSF1182903.27E-26220282IPR003657WRKY domain
SMARTSM007741.4E-37221281IPR003657WRKY domain
PfamPF031069.5E-26223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MCSLSKQDQI MDNYHQGDLT DIIRAGGSSM VGEPAVATNT WQFPSMDNPE SFSSAMDENS  60
NPHSFGDPFS SMRDPLLHNI NMPNSGFLKP AEMVSPSFDS TGDFSSNSSV MYAAPPIEDD  120
LKRPCNIFTR MLQITPNKLP ISPCGSPVMA ASPPGIQNPS IIPSDMISLN GSKGCLVDNS  180
AMQISSPRNP GIKRRKSQAK KVVCIPAPAA ANSRAGGEVV PSDLWAWRKY GQKPIKGSPY  240
PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG STRSTQPSKN  300
SNVTSKNSPN SQTHKHISPK EEQKEDVNGS TIPMEPSGGL AAGATAGASI KEENENKMDR  360
QMEFDDEEFG DGLGHGYRPS MLDANQTDDF FADLGELEAD PLDLLFNQGF PGDHGHEKGD  420
KALDPFSLLD WSDNNSSNNN TSFNGVKRGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-26196283280Disease resistance protein RRS1
5w3x_D9e-26196283280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036632.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A059A3C80.0A0A059A3C8_EUCGR; Uncharacterized protein
STRINGXP_010036632.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-99WRKY DNA-binding protein 35