PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051092.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 473aa    MW: 51549.6 Da    PI: 9.3998
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051092.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-055981123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  + C++C+k F r  nL+ H r H
  EcC051092.40 59 FICEICNKGFQRDQNLQLHRRGH 81
                  89*******************88 PP
2zf-C2H2120.00066136158123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC++C+k +  +s+ k H + +
  EcC051092.40 136 WKCEKCSKKYAVQSDWKAHSKIC 158
                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.29E-75881No hitNo description
Gene3DG3DSA:3.30.160.601.2E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0225981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8455981IPR007087Zinc finger, C2H2
PfamPF121715.6E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035572101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-5124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.29E-7131156No hitNo description
SMARTSM00355140136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006396Biological ProcessRNA processing
GO:0006886Biological Processintracellular protein transport
GO:0006952Biological Processdefense response
GO:0005618Cellular Componentcell wall
GO:0016021Cellular Componentintegral component of membrane
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005484Molecular FunctionSNAP receptor activity
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
GLSLPSTISG FARQDPSSLT NPNPSSNPSK KKRSLPGTPD PDAEVIALSP KSLMATNRFI  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKELIRRKV YICPEGTCVH HDPSRALGDL  120
TGIKKHYSRK HGEKKWKCEK CSKKYAVQSD WKAHSKICGT REYKCDCGTL FSRKDSFITH  180
RAFCDALTEE GARFTSLANT NLNFGNELIN GTMTNSTANA PNLSISMPDQ FDGQRSSSQV  240
PIWTNHVDPN LNPLGLMASG GDSYFTTPSS GSLLPDFVQA SQVPIGMLKN CSTPASSEAS  300
LIKQEESIKA NMSDQTIGSL YSNNHPSHRG STGHLSATAL LQKAAQLGST RNNNSASLLI  360
NNNAVLSSSS SSSSFFPSSL STASDFNPYT PQPRNSPRVL FRQYPSSRVE SSAGQTESRK  420
LHASPDGVEN SMTRDFLGVG NESRPFLVHQ ELGRFSPSVG SSMEGVGEAA EFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-41132201372Zinc finger protein JACKDAW
5b3h_F4e-41132201372Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032013.10.0PREDICTED: zinc finger protein JACKDAW
RefseqXP_018719786.10.0PREDICTED: zinc finger protein JACKDAW
TrEMBLA0A059ABD40.0A0A059ABD4_EUCGR; Uncharacterized protein
STRINGXP_010032012.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-102C2H2-like zinc finger protein