PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051092.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 252aa    MW: 28190.1 Da    PI: 9.6285
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051092.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.46.1e-49191452128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                   ppGfrFhPtdeel+v+yLk+kv+++ +++ evi+++diy+++Pw+Lpkk+  +e ewyfFs+r++ky++g r+nra+ sgyWkatg dk++l++ ++
  EcC051092.30  19 PPGFRFHPTDEELLVYYLKNKVASRLVPA-EVIADIDIYQYNPWELPKKAFFGEGEWYFFSPRNRKYPNGGRPNRAAGSGYWKATGIDKPILTSgGT 114
                   9*************************999.99***************87778999*************************************99677 PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   + +g+kk Lvf+ gr pkg kt+W m+eyrl
  EcC051092.30 115 KSIGVKKALVFHIGRPPKGMKTEWSMDEYRL 145
                   78***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5916172IPR003441NAC domain
PROSITE profilePS5100557.17218172IPR003441NAC domain
PfamPF023652.3E-2519145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006396Biological ProcessRNA processing
GO:0006886Biological Processintracellular protein transport
GO:0006952Biological Processdefense response
GO:0005618Cellular Componentcell wall
GO:0016021Cellular Componentintegral component of membrane
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005484Molecular FunctionSNAP receptor activity
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDLWVDAAQP ARSFPAAFPP GFRFHPTDEE LLVYYLKNKV ASRLVPAEVI ADIDIYQYNP  60
WELPKKAFFG EGEWYFFSPR NRKYPNGGRP NRAAGSGYWK ATGIDKPILT SGGTKSIGVK  120
KALVFHIGRP PKGMKTEWSM DEYRLIDATV RPPRSKRSMR LDDWVLCRVR QKEKVPRNAG  180
SHHGDFSSST KAAPSYPQNN GEVLSVHTGL CKDIAMENPF QDCLVMASLL SGQVHCPMNS  240
VSSISSQAPD NN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-661717316166NO APICAL MERISTEM PROTEIN
1ut4_B4e-661717316166NO APICAL MERISTEM PROTEIN
1ut7_A4e-661717316166NO APICAL MERISTEM PROTEIN
1ut7_B4e-661717316166NO APICAL MERISTEM PROTEIN
4dul_A4e-661717316166NAC domain-containing protein 19
4dul_B4e-661717316166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032014.10.0PREDICTED: NAC domain-containing protein 68
SwissprotA0SPJ61e-71NAMB2_TRITD; NAC transcription factor NAM-B2
SwissprotA2YMR01e-71NAC10_ORYSI; NAC transcription factor ONAC010
SwissprotK4BNG71e-72NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A059AC481e-169A0A059AC48_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010032014.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.12e-72NAC domain containing protein 2
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]