PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EcC051022.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 300aa MW: 33873.4 Da PI: 9.4764

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC051022.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l ++k +G g W+ +++ g++R++k+c++rw++yl EcC051022.20 14 RGAWTVMEDKILTSYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51	3.4e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ EcC051022.20 67 RGNISLDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 788999**************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.807	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.95E-27	12	108	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-13	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.37E-9	16	61	No hit	No description
PROSITE profile	PS51294	24.851	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.35E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGRSPCCSKE GMNRGAWTVM EDKILTSYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SLDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKLAKTD 120 RSSSSPPSLK DINHPSSKSR SKRPVSKSSC LFPTKATRPR VTRYKPLEGT KVHASPGSSL 180 PSKNQSLYSI TQEYPPYLQA NYRPSGSTCQ QGLDSESPRS HRVHCGAHDD HLQKNFVGDF 240 GLINFGYGDE FNAANVMCAD QPLTVEQEML ENWTASFCVE EKDALDLDSL AYLLNSEEWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-24	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010047389.1	0.0	PREDICTED: transcription factor MYB23
TrEMBL	A0A059CLE4	0.0	A0A059CLE4_EUCGR; Uncharacterized protein
STRING	XP_010047389.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	9e-62	myb domain protein 7