PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050924.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 410aa    MW: 43782 Da    PI: 4.4383
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050924.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-1477120448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      W+ eEd  l ++v+ +G+g+W++ +++++ gRt+k+c+ rw ++l
     EcC050924.30  77 WSVEEDSMLTRLVAAFGPGNWNAMSKMIP-GRTGKSCRFRWVNHL 120
                      *****************************.************996 PP
2Myb_DNA-binding54.92e-17126169146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eEd+ ++ a++ +G++ Wk+I+++++ gRt++ +k++w+ 
     EcC050924.30 126 RGPFSDEEDQVILTAHQIHGNK-WKSISKMLP-GRTGYAIKNHWNV 169
                      89********************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.64169120IPR017930Myb domain
SuperFamilySSF466895.29E-2972167IPR009057Homeodomain-like
SMARTSM007172.3E-1473122IPR001005SANT/Myb domain
PfamPF139212.2E-1577135No hitNo description
CDDcd001679.20E-1477120No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2377127IPR009057Homeodomain-like
PROSITE profilePS5129426.024121175IPR017930Myb domain
SMARTSM007174.3E-14125173IPR001005SANT/Myb domain
CDDcd001677.93E-11128168No hitNo description
Gene3DG3DSA:1.10.10.601.2E-21128174IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0016758Molecular Functiontransferase activity, transferring hexosyl groups
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MRRAMDFDLN VVHQDEGRDE EPELKEEDEE EDDEEEEEEV AEAEAQEGGA GGAEGAAGGG  60
GSGAGAGASG SRRGRGWSVE EDSMLTRLVA AFGPGNWNAM SKMIPGRTGK SCRFRWVNHL  120
DPSVKRGPFS DEEDQVILTA HQIHGNKWKS ISKMLPGRTG YAIKNHWNVS LKNKQADQRS  180
PDLSASDMTA AQILSEMKAF TQKALSFGDV VTSGNQEEGE GGDYHGHQNY EDQAFQAKEG  240
CVAAGTRENL PVLRPKASYG AFSVYYPPSG GPGNNSGAST VVPLQGPLAQ ALGSEFGIHH  300
FLEDAHGEPL IPHQCGYGCC SGQNGPNGGS SLLGPEFIDY IESPSSSQEL MSLAAELNEI  360
AWAQCDLPSD PGPSDLPADV STGMLSMEMR QPTRPSENKN DPCGKLKGVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-31771747104C-Myb DNA-Binding Domain
1msf_C2e-31771747104C-Myb DNA-Binding Domain
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067478.10.0PREDICTED: myb-related protein B
STRINGXP_010067478.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-60myb domain protein 109