PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050868.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 478aa    MW: 52679.4 Da    PI: 9.2961
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050868.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.74.8e-33206262360
                   -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                   DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  EcC050868.20 206 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGQIAEIVYKGEHNHPK 262
                   9***************************************.***************85 PP
2WRKY105.52.9e-33397454259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k+ver++edp+++++tYeg+Hnhe
  EcC050868.20 397 GDGFRWRKYGQKVVKGNPYPRSYYRCTSVKCNVRKHVERASEDPRAFITTYEGKHNHE 454
                   6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-30199263IPR003657WRKY domain
SuperFamilySSF1182904.58E-26203263IPR003657WRKY domain
SMARTSM007743.2E-37204262IPR003657WRKY domain
PROSITE profilePS5081124.122206263IPR003657WRKY domain
PfamPF031061.2E-25206261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-33384456IPR003657WRKY domain
PROSITE profilePS5081135.049391456IPR003657WRKY domain
SuperFamilySSF1182901.96E-28391456IPR003657WRKY domain
SMARTSM007741.4E-38396455IPR003657WRKY domain
PfamPF031065.6E-26398454IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
METKETDRVV IAKPVASRPT SSNFQSFSEL LAGAINSSPP NACTEPAVAT IRPKTVRFKP  60
VPNRAPTAVN SSQRFKIDRI RQSQAEVSGT ATGNSNSKAL KSDEKPTIIY KPLAKLVSRS  120
TVSLLANMGS FNMAHHQTLS VAEARVKSQL QDKNNSRSQP IGNLHRSISS QADTDGTSEP  180
LRLASQNMEE DTRTSPALNM DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC THPNCPVKKK  240
VERSFDGQIA EIVYKGEHNH PKPQPPKRSL SGTQGLGNVL EGSGLDSTNN RLNERDECSE  300
DRVENKNLAL TTYHGKGPLA YDPIANVASN AGGATPDNSC GISCEYDDGS KELEVEDDEP  360
KNKRRKSDNQ LNEPGISGEG IQEARAVQNS TDSEIVGDGF RWRKYGQKVV KGNPYPRSYY  420
RCTSVKCNVR KHVERASEDP RAFITTYEGK HNHEMPLRST NTAGSESDLQ AASSKDKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-32206456177Probable WRKY transcription factor 4
2lex_A5e-32206456177Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046937.10.0PREDICTED: WRKY transcription factor 44 isoform X1
RefseqXP_010046944.10.0PREDICTED: WRKY transcription factor 44 isoform X1
TrEMBLA0A059DEN80.0A0A059DEN8_EUCGR; Uncharacterized protein
STRINGXP_010046937.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-107WRKY family protein