PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050712.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 268aa    MW: 30279.9 Da    PI: 8.4613
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050712.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.6e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l+ ++k++G  +W++ a+  g++R++k+c++rw +yl
     EcC050712.10 16 KGAWSAEEDEKLIAYIKRHGIWNWSRMAELAGLRRSGKSCRLRWMNYL 63
                     79******************99************************97 PP
2Myb_DNA-binding48.81.6e-1570112246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eE e+++++++ lG++ W++Ia+++  gRt++++k++w++
     EcC050712.10  70 GNFTKEEVEIIIKLHEVLGNK-WSAIASKLV-GRTDNEVKNYWHT 112
                      89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7611163IPR017930Myb domain
SuperFamilySSF466898.39E-2914110IPR009057Homeodomain-like
SMARTSM007172.6E-131565IPR001005SANT/Myb domain
PfamPF002498.1E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-231770IPR009057Homeodomain-like
CDDcd001678.82E-111863No hitNo description
PROSITE profilePS5129423.83564118IPR017930Myb domain
SMARTSM007171.0E-1468116IPR001005SANT/Myb domain
PfamPF002491.7E-1370112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2471117IPR009057Homeodomain-like
CDDcd001671.83E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAELGVVLNE KGSLRKGAWS AEEDEKLIAY IKRHGIWNWS RMAELAGLRR SGKSCRLRWM  60
NYLRPNLRHG NFTKEEVEII IKLHEVLGNK WSAIASKLVG RTDNEVKNYW HTRLKKRFKG  120
KPMQKPRKSE AARVSNSVDA NHESSSQGEE GRSTPTSTPV QLLNLGDFTG NPTSTPDNFC  180
ASSSNQAIGV PGDKEKSFEN NLCSSYVDDK FQSYLWAQHF SVEDAHRVQD LNNLFIDSTT  240
TILYPGWPLE TASSSASLED LAFSLWEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141185108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041850.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A059CBQ51e-160A0A059CBQ5_EUCGR; Uncharacterized protein
STRINGXP_010041850.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-48myb domain protein 15