PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050578.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 53aa    MW: 6269.82 Da    PI: 7.4533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050578.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.94e-181372359
                  EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                  sYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+
  EcC050578.20  1 SYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHS 37
                  8***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.3E-8138IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-15137IPR003657WRKY domain
PfamPF031063.0E-12136IPR003657WRKY domain
PROSITE profilePS5081116.409136IPR003657WRKY domain
SuperFamilySSF1182901.44E-13137IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000287Molecular Functionmagnesium ion binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
SYYRCTHSNC RVKKRVERLS EDCRMVITTY EGRHNHSPCD DSNSSEHEGF NSF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052790.13e-32PREDICTED: probable WRKY transcription factor 12
SwissprotQ93WY41e-24WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A059CF367e-31A0A059CF36_EUCGR; Uncharacterized protein
STRINGXP_010052790.11e-31(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.15e-27WRKY family protein
Publications ? help Back to Top
  1. Yu Y, et al.
    MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering.
    Plant Sci., 2013. 212: p. 1-9
    [PMID:24094048]
  2. Yang L, et al.
    PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa.
    Sci Rep, 2016. 6: p. 18643
    [PMID:26819184]
  3. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  4. Han Y, et al.
    WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis.
    Plant Mol. Biol., 2019. 99(1-2): p. 149-159
    [PMID:30617455]