PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC050567.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 231aa MW: 25430.3 Da PI: 10.4375

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC050567.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.1	5.5e-07	17	102	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C.......................................TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as....................................kapskKlsKaeiLekAveYIksL 54 + +Er+RR +++s ++L +l+P+ ++ + + ls + e+A YI +L EcC050567.10 17 KTVERNRRIHMKSLCFKLASLVPShQPrsapkvkpprasvfalpvrgfsppafvlsgkihrgvSRFQDMLSQQDQIEQAAAYIAQL 102 679*********************55598888888888888888888888888888888877766667788888888888888777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.2E-8	16	39	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.55E-7	17	41	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-8	79	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.55E-7	81	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MKKKSSSSSD SIKPDRKTVE RNRRIHMKSL CFKLASLVPS HQPRSAPKVK PPRASVFALP 60 VRGFSPPAFV LSGKIHRGVS RFQDMLSQQD QIEQAAAYIA QLKEKVEMLK AKKELAEARL 120 DVSRRRGGGE CGPAFDGAAA RQASALPFVS IRDWDSGIEV TLISGCGASK NFMLYEVIGI 180 LEEEGAEVVS ASISNIGDKV FYTLHAQVRL SRVGVETSRV SQRLHELVYS F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028270.1	1e-123	PREDICTED: transcription factor ORG3
TrEMBL	A0A059CZ33	1e-121	A0A059CZ33_EUCGR; Uncharacterized protein
STRING	XP_010028270.1	1e-122	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	1e-27	bHLH family protein