PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050407.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 298aa    MW: 32968.9 Da    PI: 5.7366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050407.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d++ + G g+W++ ++  g+ R++k+c++rw +yl
     EcC050407.40 14 KGPWTPEEDQILIDYISKNGHGSWRALPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding43.66.7e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
     EcC050407.40  67 RGSFSLQEEKLVIQLHGILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.062965IPR017930Myb domain
SuperFamilySSF466893.67E-2911108IPR009057Homeodomain-like
SMARTSM007177.0E-141363IPR001005SANT/Myb domain
PfamPF002493.5E-161461IPR001005SANT/Myb domain
CDDcd001674.49E-111661No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2465116IPR009057Homeodomain-like
SMARTSM007178.2E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129418.28466116IPR017930Myb domain
PfamPF002494.4E-1367112IPR001005SANT/Myb domain
CDDcd001672.24E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006378Biological ProcessmRNA polyadenylation
GO:0005849Cellular ComponentmRNA cleavage factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003729Molecular FunctionmRNA binding
GO:0004000Molecular Functionadenosine deaminase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRSPCCERK DLKKGPWTPE EDQILIDYIS KNGHGSWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGSF SLQEEKLVIQ LHGILGNRWA AIAAQLPGRT DNEIKNLWNT HLKKRLLSTG  120
LNPLTQDPFS PQGSMTKLPA SSITRHMAQW ESARLEAEAR LSRETLLLNT LPLQQKTDGD  180
YFLRVWNSEV GESFRSINRR SKSASLSAVS QASSCAECET SSVATIEIGT TYLGADADST  240
PNDHDNDADG KSSGAEYEAL ATSEYSGSSE FDSSTVTALE MLFDFPIEND MSFLEGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30111164108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055169.10.0PREDICTED: myb-related protein 340 isoform X1
RefseqXP_010055171.10.0PREDICTED: myb-related protein 340 isoform X2
SwissprotQ9M2D91e-115MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A059BZU30.0A0A059BZU3_EUCGR; Uncharacterized protein
STRINGXP_010055169.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-111myb domain protein 17