PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC050250.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 218aa MW: 23222.7 Da PI: 4.3943

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC050250.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.3	1.7e-12	2	44	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i++ +r+v fskR +++KKAeEL +L++ + + + sstg+ EcC050250.10 2 ISDLQKRHVAFSKRCPTLFKKAEELAILTGSDLFLGVRSSTGR 44 88999****************************9999999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.853	1	52	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.2E-4	1	51	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-12	2	46	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-9	2	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MISDLQKRHV AFSKRCPTLF KKAEELAILT GSDLFLGVRS STGRTFYSSY QRGKLIESNI 60 AHRKGKVNSV GHGDCESFWT SPVNSATGGT FDSMSSGLND DEFNMDELLN FSEDCIGDGD 120 RPENSAIRGP SNPTCSGLDG SEFNPDAFLD PSKDCIGHVK CQCCVSVCVG VGNGILSLPE 180 NSDAGGGRSG VELMRSGVEG DGYDPNDFLT LDDLGVSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.2	7e-07	MIKC_MADS family protein