PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC049934.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 217aa MW: 24244.1 Da PI: 9.9606 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.1 | 3.7e-33 | 31 | 88 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers+ed ++v++tYeg+H+h EcC049934.10 31 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSEDSSTVVTTYEGQHTH 88 59******************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.6E-35 | 16 | 91 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 23 | 90 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.374 | 26 | 91 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-39 | 31 | 90 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.1E-27 | 32 | 88 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0031048 | Biological Process | chromatin silencing by small RNA | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0004601 | Molecular Function | peroxidase activity | ||||
GO:0020037 | Molecular Function | heme binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MRVSLKPKKK NQKRQREPRF AFVTKSEVDH LDDGYRWRKY GQKAVKNSPY PRSYYRCTTA 60 GCGVKKRVER SSEDSSTVVT TYEGQHTHLS PATTKSGLGI IQSEAAASYC GGLPATAASF 120 LIPDHYNHQQ LQPLNVPYAF TSRPSNLSLL TSTTTTTTSE PHRFSPSFLR FYEEKPFGAV 180 PSSTSSSSGL DLARDHGLLQ DVIVPSQLRN KQEPKEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-30 | 24 | 92 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-30 | 24 | 92 | 10 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010024807.1 | 1e-154 | PREDICTED: probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 9e-51 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A059B512 | 1e-154 | A0A059B512_EUCGR; Uncharacterized protein | ||||
STRING | XP_010024807.1 | 1e-154 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 9e-53 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
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