PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049702.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 407aa    MW: 44157.9 Da    PI: 5.4988
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049702.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.5e-1770115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+W++eEd  l  +v+++G ++W++Iar ++ gR++k+c++rw + 
     EcC049702.30  70 RGPWSPEEDAVLTGLVAKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 115
                      89******************************.***********985 PP
2Myb_DNA-binding58.91.1e-18122166147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd+++++a++++G++ W++Ia+ ++ gRt++ +k++w++ 
     EcC049702.30 122 RKPFTDEEDLIIIKAHAMHGNK-WAAIAKLLP-GRTDNAIKNHWNST 166
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.40165116IPR017930Myb domain
SuperFamilySSF466898.99E-3168163IPR009057Homeodomain-like
SMARTSM007171.1E-1369118IPR001005SANT/Myb domain
PfamPF002498.0E-1670115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2671123IPR009057Homeodomain-like
CDDcd001674.13E-1372114No hitNo description
PROSITE profilePS5129427.357117171IPR017930Myb domain
SMARTSM007178.4E-18121169IPR001005SANT/Myb domain
PfamPF002496.2E-17122166IPR001005SANT/Myb domain
CDDcd001674.79E-13124167No hitNo description
Gene3DG3DSA:1.10.10.604.6E-25124170IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MKPVGSTKSS IDDDGDGDGE DRATAMDADV NLKEEDDRQL AADEEMPVAD CGGGGGGGGG  60
GGGAAGSRVR GPWSPEEDAV LTGLVAKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPSV  120
KRKPFTDEED LIIIKAHAMH GNKWAAIAKL LPGRTDNAIK NHWNSTLRRK GIWLRRSKTR  180
HTDMTEESWP VETNASSEET LSAGDSQSNR PRDGTEIAVE NGLKQNETEA QRMDGLSVAE  240
KTENTVSRPQ PRVSAFRIYK PEKSSSTGSG FSKEIHAQGP SMLAFKTELG VHNFLDDVHS  300
DPKIPPHCGY GCCASPTGFH SESSLLGPDF VDYEEPPSYS TLDLMSVALD LNNTAWIKTG  360
LVNGGSQIPE TGEFRRLRDT NSSYLGLFEP NKKTEHTCFQ EGNNKLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-39691706107B-MYB
1h88_C7e-396917057158MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-396917057158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031265.10.0PREDICTED: myb-related protein B
TrEMBLA0A059A9M00.0A0A059A9M0_EUCGR; Uncharacterized protein
STRINGXP_010031265.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.19e-94myb domain protein 109